Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01648 ATGGTGGTAGCTGTGACAGTTAGCGTGAACTTCAGCAACAAGGGAGAAATCGAGGATGAAAAGGAAGCATCAAAATCTCACGTAGCTTCCTCGATGAAAGCGGTGAAAACCCTTTGCGCACCCACCGAATACCAGAAAGAATGCGAAGACAGTCTGAATGCCAACGCCGGCAACGTCACAGACCCCAGGGAACTAATAAAAATCGTCTTTAACGTCACCTTTAGTAGAATCAGCGACGGACTTGGAAAAACGCAGCTCATGCAGGAAGCCGAGAGCGACCCCAGAACCAAAGAGGCCCTCGACACATGTAAACAACTCATGAACCTCTCCATCGAGGAGTTCAAGCGCTCCATCGACAGGTTCAACAAGTTCGACCTTAACAGCCTTGACCGCATCCTCACCAGACTCAGGGTGTGGCTCAGTGGCGCCGTCACGTACCAGGAAACGTGCCTTGATGCGTTCGAGAACACCACAACCGACGCTAGCAAGAAGATGCAGGGACTCTTGCAAACCTCCATGCACATGACCAACAACGGCCTCTCTATCATCAACGACCTGGCGAAAACTCTACGAGATACGCGGCAACAAGCCTGGGCGCCGCCTCCTGAACTCTACCGATGCGGCAATTTCACCAACATCAACGATGCTTTGAAGTCCGTGCCCAAGAAAAATCTAAGGCCCTATATTATCTACATCAAGGAGGGTCTTTACAACGAGTACGTCGAAGTTGTCAGAAATATGACCCATGTCGTCATGATAGGCGATGGTGGTAAAAAGACAAGAATCACGGGCAGCAAAAACTTCGTCGACGGAGTTGGTACCTTCAGAACCGCCAGCGCTGCTATTCTTGGAGATTTCTTTGTTGGCATAGGTATCGGATTTGAGAACACTGCCGGCCCTGAAAAACATCAGGCAGTTGCATTGAGGGTTCAATCCGACAGGTCCATCTTCTACAAGTGCCGAATGGATGGGTATCAAGACACTCTCTACGCCCGCACCATGCGCCAATTCTACCGCGACTGTGTCATTTCTGGCACCATCGACTTTGTCTTCGGTGACGCAGTGGCTGATCTCCAGAACTGCACATTCGTGGTCCGAAAACCCTTGACAAACCAGCAATGCATTGTGACCGCACAAGGCAGAAAGGAGGTTAACCAGCCATCCGGTCTAGTCATCCATGGAGGGTCCATTGTGTCAGACGTCAAGTACTACCCATATAGGTTCGACAACAAGGCCTACTTGGCTCGTCCATGGAAGAATTTCTCAAGGACCATCTTCATGGGCTCTTACATTGGTGACTTGATCACACCCGATGGCTACATGCTATGGCAAACATTGGATGGCTTTTCAAGAATATGA 1359 0.4996 MVVAVTVSVNFSNKGEIEDEKEASKSHVASSMKAVKTLCAPTEYQKECEDSLNANAGNVTDPRELIKIVFNVTFSRISDGLGKTQLMQEAESDPRTKEALDTCKQLMNLSIEEFKRSIDRFNKFDLNSLDRILTRLRVWLSGAVTYQETCLDAFENTTTDASKKMQGLLQTSMHMTNNGLSIINDLAKTLRDTRQQAWAPPPELYRCGNFTNINDALKSVPKKNLRPYIIYIKEGLYNEYVEVVRNMTHVVMIGDGGKKTRITGSKNFVDGVGTFRTASAAILGDFFVGIGIGFENTAGPEKHQAVALRVQSDRSIFYKCRMDGYQDTLYARTMRQFYRDCVISGTIDFVFGDAVADLQNCTFVVRKPLTNQQCIVTAQGRKEVNQPSGLVIHGGSIVSDVKYYPYRFDNKAYLARPWKNFSRTIFMGSYIGDLITPDGYMLWQTLDGFSRI 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01648 452 NCBIfam pectinesterase inhibitor domain 28 186 IPR006501 GO:0004857
Spst1g01648 452 ProSitePatterns Pectinesterase signature 2. 343 352 IPR033131 -
Spst1g01648 452 CDD PMEI-like_3 37 188 - -
Spst1g01648 452 FunFam Pectinesterase 4 205 451 - -
Spst1g01648 452 FunFam Pectinesterase 31 187 - -
Spst1g01648 452 SUPERFAMILY Pectin lyase-like 207 444 IPR011050 -
Spst1g01648 452 Gene3D - 205 450 IPR012334 -
Spst1g01648 452 PANTHER PECTINESTERASE 10 446 - -
Spst1g01648 452 Pfam Plant invertase/pectin methylesterase inhibitor 34 182 IPR006501 GO:0004857
Spst1g01648 452 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 188 IPR035513 -
Spst1g01648 452 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 186 IPR035513 -
Spst1g01648 452 SMART PMEI_2 30 182 IPR006501 GO:0004857
Spst1g01648 452 Pfam Pectinesterase 208 445 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01648 Spst-Chr1 20379293 20380762 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01648 1 443 Carbohydrate Esterase AT3G05610 45.798 9.31e-153 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01648 K01051 - gmx:100801686 716.842