Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01616 ATGGATAACTATGGATCATCTTCTCCATACCGGTATCCAAACCCATATGTGTACCCTCCCAACCCTCAACAACCATACCCTCCTCCTCCAGGTTCAGCTCCTGATCCATATGCACATGTTCCTTATTCTCCGTATCCTTACCTTTCTTCACATTCCTTCAACTATTCTCATCCTCTACCTCCTCCTAGACCTTCCTCACATTCTGGCCATTTTGAGTATTCTTATGCTCCTCCTCACACTATGGACTTTCCCCACCCACCTCCGCCATCTTATGCTCTTCCTCCCACTTATCCTTATCCCTACCACGTTCCTCCACCAAACCATGATTCTCCCAGGCCTTCCCTTTCACACCATGGCAGTTTCGGACATGGATCACCTCCTCACTATTATCCACCAAAGGAGTCCTATTCGGCTCCTGATATGCATTCCCGCACCAATAGCTTCTCTGGTCCCTATTGGCCGGAGAACACAAGCATTGCTACAGGAGGTAAAGTGTCACAAACTAGTGATGATTCCAAGCCTTCTCAGGGTTCTGCTTATCCACCTTTGGATGATCTTTTGAGCAATGTTCGGTTGTCTGATGAGAAGCCAACTGCTCCTGCGCCTGCAAGGCAACCATTAATGCATTCCGTTTCAGTTTCTAAGTTGCAACAGAAGAAAGAAGACTTTTATGGATTTTTGAATCACTCCTTCTCCGGGTGGGGTTCTTCTTACCCCGATCGGGTGGATTCTTCTAAGCTTTCTATGTCTGGCTCGTTTAATGAATCACTGCATCGTCAGAGTTTGCAGATTGTTCCACTCCAGAATAAAGGGTCCTTGAAAGTTTTGCTCCTCCATGGAAATTTAGATATATGGGTCAATGAAGCCAAGAATCTTCCAAATATGGACATGTTTCACAAAACTTTAGGGGATATGTTCGGTAAGTTACCTGGTAGTGTGAGCAATAAAATTGAAGGAACCATGAATAAGAAGATTACTAGTGATCCCTATGTATCGATTTCAATATCCAATGCTGTAATTGGAAGGACTTATGTCATTAGCAACTCTGAAAATCCTGTTTGGTTGCAACATTTCTATGTTCCTGTTGCACATCATGCTGCTGAAGTGCACTTTCTTGTTAAAGACAGTGATATTGTGGGTTCACAACTCATTGGCATTGTGGCAATTCCAGTGGAGCAAATATACTCAGGAGAAATAGTTGAAGGAAGCTTTCCAATCCTGAATAGTAATGGGAAGCCATGTAAGCAATGTGCTGTCCTGAGCCTATCCATTCAGTACATACCTATGGAGAAGCTGAGCATTTATCACCAAGGAGTTGGAGCAGGGCCTGAGTATATCGGGGTTCCTGGAACATATTTTCCTTTGAGGAAAGGTGGAACCGTTACACTGTATCAAGACGCTCATGTTCCAGATGGAACCCTCCCTAATGTGTTGCTCGACAGTGGGATGTACTATGTGAATGGAAAGTGTTGGCAAGATATTTTTGTTGCCATAAGTCAAGCTCGGCGTTTGATTTATATCACAGGGTGGTCAGTGTGGCACAAAGTAAGGTTGGTTAGGGATGCTGCTGGTTATTCTGCAGATTATACCTTGGGTGATCTTCTAAGGTCAAAGTCACAGGAAGGAGTAAGAGTGCTTCTGCTTGTCTGGGATGATCCTACATCAAGAAGCATTTTAGGTTATAAAACAGTAAGTAAAGCAACTTTTTTCTGTTACATATCTCTGCATTGCCATGCTTTAGACTGGCTGGTAGGATTTGATTAG 1764 0.4365 MDNYGSSSPYRYPNPYVYPPNPQQPYPPPPGSAPDPYAHVPYSPYPYLSSHSFNYSHPLPPPRPSSHSGHFEYSYAPPHTMDFPHPPPPSYALPPTYPYPYHVPPPNHDSPRPSLSHHGSFGHGSPPHYYPPKESYSAPDMHSRTNSFSGPYWPENTSIATGGKVSQTSDDSKPSQGSAYPPLDDLLSNVRLSDEKPTAPAPARQPLMHSVSVSKLQQKKEDFYGFLNHSFSGWGSSYPDRVDSSKLSMSGSFNESLHRQSLQIVPLQNKGSLKVLLLHGNLDIWVNEAKNLPNMDMFHKTLGDMFGKLPGSVSNKIEGTMNKKITSDPYVSISISNAVIGRTYVISNSENPVWLQHFYVPVAHHAAEVHFLVKDSDIVGSQLIGIVAIPVEQIYSGEIVEGSFPILNSNGKPCKQCAVLSLSIQYIPMEKLSIYHQGVGAGPEYIGVPGTYFPLRKGGTVTLYQDAHVPDGTLPNVLLDSGMYYVNGKCWQDIFVAISQARRLIYITGWSVWHKVRLVRDAAGYSADYTLGDLLRSKSQEGVRVLLLVWDDPTSRSILGYKTVSKATFFCYISLHCHALDWLVGFD 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01616 587 ProSiteProfiles C2 domain profile. 258 404 IPR000008 -
Spst1g01616 587 MobiDBLite consensus disorder prediction 56 79 - -
Spst1g01616 587 SMART C2_3c 281 403 IPR000008 -
Spst1g01616 587 FunFam Phospholipase D delta 275 422 - -
Spst1g01616 587 MobiDBLite consensus disorder prediction 13 34 - -
Spst1g01616 587 MobiDBLite consensus disorder prediction 94 111 - -
Spst1g01616 587 MobiDBLite consensus disorder prediction 94 185 - -
Spst1g01616 587 MobiDBLite consensus disorder prediction 1 34 - -
Spst1g01616 587 Gene3D C2 domain 259 415 IPR035892 -
Spst1g01616 587 Pfam C2 domain 280 406 IPR000008 -
Spst1g01616 587 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 278 428 IPR035892 -
Spst1g01616 587 CDD C2_plant_PLD 274 427 - -
Spst1g01616 587 MobiDBLite consensus disorder prediction 139 176 - -
Spst1g01616 587 SUPERFAMILY Phospholipase D/nuclease 483 556 - -
Spst1g01616 587 PANTHER PHOSPHOLIPASE D 270 562 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01616 Spst-Chr1 20016786 20018549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01616 26 563 Phospholipase D Gene Family (Wang group) AT2G42010 54.741 5.90e-170 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01616 K01115 - gmx:100791059 882.863