Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01609 ATGGCCTCCGGCATCGACATGTCTCTCGACGACATTATGAGGCGCTCCGCTGCGGCGGCGGCCGCGTCTCGCCGGGGATTCACGTATGTTCGCAACCCGGCCAGAACGACGCCGTATTCCGTCCCGCAGGCAAGGCAACGCGGAATGATTCCGGAAATGGTTTTTGAAGATGACGGTGCTGCTATGATCGAAAGTGGCACCAAACTCTTTATATCAAACTTGGATCATGGAGTTTCAAACGGTGATATTAAGCTACTGTTCTCGGATGAGGGTGAATTGAAAAGATACTCCATTCATTATGATAACAACGGGAGATCAAAGGGAACAGCAGAAGTTGTGTTCATAAGGCACTCTGATGCTTTATCAGCCATCAAGAAATACAACAATATGAGGCTTGATGGTAAACCATTGCAAATTGAGCTCGTTGGAACTAGTACTCCTGCTGTTGCTCCTCTTTGTCAAAATAACTTACTGGGAAGGCCAAATGATGCGCTTTTAAGCAAAGGAGGAAGGGTTGGAGGTAGGAGGTTCCACAATGACTTTGTACAGGGCCACCTTCCAAGGGGCCGTGGACAGGGCCATATTCGGAAGGTATATTTTAGAGATCTTGATCATGCCTTGGAGAGGTCTCAGCGCAATCCGAGAGGCCACGCAAAAGTAAAGAGCAAAAATAGAAAAGTGACTGCTAAAGATCTTGATGATGACTTGGAGAGGTATCACCGAGAGGCTAAGCAGAAAAAACAAAATGGAAAGTGA 756 0.4722 MASGIDMSLDDIMRRSAAAAAASRRGFTYVRNPARTTPYSVPQARQRGMIPEMVFEDDGAAMIESGTKLFISNLDHGVSNGDIKLLFSDEGELKRYSIHYDNNGRSKGTAEVVFIRHSDALSAIKKYNNMRLDGKPLQIELVGTSTPAVAPLCQNNLLGRPNDALLSKGGRVGGRRFHNDFVQGHLPRGRGQGHIRKVYFRDLDHALERSQRNPRGHAKVKSKNRKVTAKDLDDDLERYHREAKQKKQNGK 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01609 251 SUPERFAMILY RNA-binding domain, RBD 62 142 IPR035979 GO:0003676
Spst1g01609 251 SMART rrm1_1 68 140 IPR000504 GO:0003723
Spst1g01609 251 MobiDBLite consensus disorder prediction 210 251 - -
Spst1g01609 251 CDD RRM_THOC4 67 141 - -
Spst1g01609 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 144 IPR000504 GO:0003723
Spst1g01609 251 MobiDBLite consensus disorder prediction 225 251 - -
Spst1g01609 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 137 IPR000504 GO:0003723
Spst1g01609 251 Gene3D - 55 226 IPR012677 -
Spst1g01609 251 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 242 - -
Spst1g01609 251 Coils Coil 229 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01609 Spst-Chr1 19964587 19966652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01609 66 141 Eukaryotic Initiation Factors Gene Family AT2G23350 31.579 8.13e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01609 K12881 - gmx:100785926 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01609 1 19964587 19966652 Spst1g01609 1 19964587 19966652 ECH