Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01605 ATGGTGAACGTCATGGAGTGGCAGAAGCAGCGTTGGCAACCGAACGGGAACGCGGAAATGATGTACGTCAAAGTGATGACAGACGAACAACTCGAGACTCTTCGCAAACAGATTGCCGTTTACGCAACAATCTGCGAACGACTCATCGAGATGCACAAAACCATCTCTTCTCACCAAGATCTCGCTGGGATTAGACTGGGAAATATGTACTGCGATCCATTGTTGGGGTCCGGTGGCCACAAAATAGCTTCGAGGCAGAGGTGGACTCCGACGGCTATGCAACTTCAAATTCTGGAGCGGATATTTGATCAGGGGACTGGGACTCCCAGCAAGGAAAAGATCAAGGAGATCGCTGCTGAGCTCAGCCACCATGGCCAGATTTCTGAGACTAATGTGTATAACTGGTTTCAGAACAGGAGGGCTCGTTCCAAAAGAAAGCAGCAGAATGTGGCACCTGGTGTTAATGCTGAATCAGAAGTAGAGACCGAGGTTGATTCCAAGGATAAGAAGACAAAGGCAGACGATTTTCAGTCCCAGCTCAGGGTTTCTACTGGGCCTTCTGATAGTTTAGGCTTCCAGAACCATGATGATCTGCAGTACCTGAATGAGAATCCAGAGTCCAACAAACCAGATTCTGTGTTCCCGTCTGATGGGGGTTTAAGATCCACTAGAAATTTCAACCATGTAGCTGATTTCGATGGGCTGCTATCGAACTCAGGGAGCGACTATCTTACTGGAAAAATGGAAGCCCATGAGAACTATGACTTATACCAGCCATCAGACGACTTCGACATGGCAGGTTGA 804 0.4813 MVNVMEWQKQRWQPNGNAEMMYVKVMTDEQLETLRKQIAVYATICERLIEMHKTISSHQDLAGIRLGNMYCDPLLGSGGHKIASRQRWTPTAMQLQILERIFDQGTGTPSKEKIKEIAAELSHHGQISETNVYNWFQNRRARSKRKQQNVAPGVNAESEVETEVDSKDKKTKADDFQSQLRVSTGPSDSLGFQNHDDLQYLNENPESNKPDSVFPSDGGLRSTRNFNHVADFDGLLSNSGSDYLTGKMEAHENYDLYQPSDDFDMAG 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01605 267 MobiDBLite consensus disorder prediction 144 195 - -
Spst1g01605 267 Pfam Homeodomain 85 145 IPR001356 GO:0003677
Spst1g01605 267 PANTHER WUSCHEL-RELATED HOMEOBOX 13 5 265 IPR044559 GO:0003700
Spst1g01605 267 ProSiteProfiles 'Homeobox' domain profile. 81 146 IPR001356 GO:0003677
Spst1g01605 267 MobiDBLite consensus disorder prediction 160 176 - -
Spst1g01605 267 MobiDBLite consensus disorder prediction 177 195 - -
Spst1g01605 267 CDD homeodomain 85 147 IPR001356 GO:0003677
Spst1g01605 267 Gene3D - 86 151 - -
Spst1g01605 267 SMART HOX_1 83 150 IPR001356 GO:0003677
Spst1g01605 267 SUPERFAMILY Homeodomain-like 83 148 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01605 Spst-Chr1 19939416 19942432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01605 4 267 Wox Gene Family AT4G35550 49.291 2.60e-77 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Spst1g01605 Homeodomain 7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01605 - - gmx:100784355 470.7