Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01604 ATGAAGTGCAAAGTCATGTTAATGCATCAGCAAGATCACGTGGTGCCAAACATGTCAGAAGCTAGTTCTTTTTCCATTGACATTGCAAAAATGAGAAATGCTCTTCTATCATCAGTTTCTTCTAGGCTTCACTGCTATGGAGATGATGATGAAGCTCAGTTTGAAATTTTGGAGGGCTCCATGCAAATGAACGACCAAACAAATCGCATTTCTCTTTCCAGAAACTTCCTTAGCAATGGCTTCAACATGGAGTCTAGAATACTCAATAATGACAGCCAATTAATTGAAGGAGTCAATGCAGAGCCCTGCCAATCTCAGTCTCAGAGTTATGACTACAATCATCACCAAGGTAGTCTCTATGGCATCCCAAGATTCAAAGACATTTATCAGCACTCACTGTTACTTGACAAAGACCCTTCTTCTCAATATGGAGTACGTCTATGTTTGCTTGTGCCTATGAGGAGAAATCCGAAGCTTAGCGATAAAGTTACAACTCTACAGAAGTTGACTGATACCGCCTCAGTTCTTCATGAGGCTTCTCTTTATATCAAGCTTCTTCAAGCACAAATCCGGGTTTCACATCAGGAATGTGGGGACAAATTGCAGGTTGACCTAAGGAGCAGAGGACTCTGTTTGGTTCCCGTATCAATGACAGAGAAAGTAACAATGGACGACCAGATTTATCAGGCTACATCCTCAGGAATTATTCACTCCTGA 717 0.4142 MKCKVMLMHQQDHVVPNMSEASSFSIDIAKMRNALLSSVSSRLHCYGDDDEAQFEILEGSMQMNDQTNRISLSRNFLSNGFNMESRILNNDSQLIEGVNAEPCQSQSQSYDYNHHQGSLYGIPRFKDIYQHSLLLDKDPSSQYGVRLCLLVPMRRNPKLSDKVTTLQKLTDTASVLHEASLYIKLLQAQIRVSHQECGDKLQVDLRSRGLCLVPVSMTEKVTMDDQIYQATSSGIIHS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01604 238 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 119 219 - -
Spst1g01604 238 CDD bHLH_AtbHLH_like 154 192 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01604 Spst-Chr1 19935048 19938138 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01604 153 227 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 39.394 5.66e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01604 - - var:108336663 263.077