Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01598 ATGAAGAGAGAAAGAGAGGTTGATAGTTTAACCATGGCGAATTGTTTGATGTTGCTTTCTCGCGGAGGTGAATTTGAGGCCACATACTCAAGTTCTTCTATGAGCAACCGAGTCTTTGAGTGCAAGACATGCAATAGGCAATTCCCTTCATTTCAAGCCCTTGGTGGCCATAGGGCTAGTCACAAGAAACCTAGGTTGATGGCAGGAGATAGTATTGAAGGCCAATTGCTTCATGATTCACCCCCAAAGCCAAAGACTCATGAGTGCTCCATTTGTGGATTGGAGTTTGCTATAGGGCAAGCCTTGGGAGGTCACATGAGGAGACACAGAGCTGCAACTTTGAATGCAAACATGCAGAATTCCACCACTATCAGCAGTAGTAGTGGTGGTAGCAGTAGCGATTCTTCAACCAAGAACAAAGTTCGCGACAAGAGAGTTTTGGTTTTGGATTTGAATTTGACACCCTTTGAGAATGACTTGGAGATTTTGAAGATTGGAAAACCAACTACTTTAGTTGATTATTTGTATTAA 531 0.4275 MKREREVDSLTMANCLMLLSRGGEFEATYSSSSMSNRVFECKTCNRQFPSFQALGGHRASHKKPRLMAGDSIEGQLLHDSPPKPKTHECSICGLEFAIGQALGGHMRRHRAATLNANMQNSTTISSSSGGSSSDSSTKNKVRDKRVLVLDLNLTPFENDLEILKIGKPTTLVDYLY 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01598 176 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Spst1g01598 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Spst1g01598 176 Pfam C2H2-type zinc finger 87 111 - -
Spst1g01598 176 Pfam C2H2-type zinc finger 38 64 - -
Spst1g01598 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 109 IPR013087 -
Spst1g01598 176 PANTHER ZINC FINGER PROTEIN ZAT5 5 158 - -
Spst1g01598 176 MobiDBLite consensus disorder prediction 118 139 - -
Spst1g01598 176 SUPERFAMILY beta-beta-alpha zinc fingers 37 109 IPR036236 -
Spst1g01598 176 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Spst1g01598 176 SMART c2h2final6 87 109 IPR013087 -
Spst1g01598 176 SMART c2h2final6 39 61 IPR013087 -
Spst1g01598 176 MobiDBLite consensus disorder prediction 118 136 - -
Spst1g01598 176 Gene3D Classic Zinc Finger 36 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01598 Spst-Chr1 19896649 19897179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01598 12 167 C2H2 Transcription Factor Family AT2G28710 45.509 2.94e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst1g01598 zf-C2H2_6 8.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01598 - - gmx:100781134 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01598 1 19896649 19897179 Spst1g01598 1 19896649 19897179 ECH