Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01595 ATGGCAATGTATAGAATTGCACTTGGGTCCCCTTCAGAGGCTGGCCAACCTGATGCAATTAGAGCAGCTTTTGCAGAATTCTTCTCCATGATCATTTTTGTTTTTGCTGGGGAAGGATCTGGCATGGCTTACAGTAAACTTACCAACAATGGACCAGCAACACCAGTTGGTCTCATAGCTGCATCACTATCTCATGCATTTGGGCTATTTGTGGCTGTTTCTGTTGGGGCGAACATTTCTGGTGGTCATGTGAACCCTGCAGTCACATTTGGTGCCTTCATAGGAGGAAACATAACCCTGCTGAGAAGTATTTTGTATTGGATTGCACAGTTACTTGGTTCAGTTGTTGCATGCATTCTTCTCAAGTCTGCAACTGGTGGAATGGAAACATCAGGGTTTTCTCTATCCCCTGGGGTATCTGTGAGGAATGCATTAGTTTTTGAAATTGTGATGACTTTTGGATTGGTATATACAGTTTATGCCACATCAGTGGATCCAAAGAAAGGGAATGTAGGAGTTGTTGCCCCAATTGCAATTGGTTTCATTGTGGGTGCCAATATCTTAGTTGGTGGTGCTTTTGATGGTGCATCCATGAACCCAGCTGTGTCCTTTGGCCCTGCAGTAGTTACCTGGCAATGGACTCATCAATGGGTTTATTGGCTTGGACCATTCATTGGTGCAGCAATTGCTGCAATTATCTATGATAATATCTTCATTGGTGATGATGGTCATCAACCTCTTTCAAACAGTGACTTCTAG 759 0.4348 MAMYRIALGSPSEAGQPDAIRAAFAEFFSMIIFVFAGEGSGMAYSKLTNNGPATPVGLIAASLSHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRSILYWIAQLLGSVVACILLKSATGGMETSGFSLSPGVSVRNALVFEIVMTFGLVYTVYATSVDPKKGNVGVVAPIAIGFIVGANILVGGAFDGASMNPAVSFGPAVVTWQWTHQWVYWLGPFIGAAIAAIIYDNIFIGDDGHQPLSNSDF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01595 252 FunFam Probable aquaporin TIP1-1 4 251 - -
Spst1g01595 252 SUPERFAMILY Aquaporin-like 17 241 IPR023271 -
Spst1g01595 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Spst1g01595 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst1g01595 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst1g01595 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst1g01595 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst1g01595 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst1g01595 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst1g01595 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst1g01595 252 PANTHER AQUAPORIN-8 6 245 IPR034294 -
Spst1g01595 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Spst1g01595 252 Pfam Major intrinsic protein 16 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01595 Spst-Chr1 19873849 19875304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01595 1 252 Major Intrinsic Protein MIP AT4G01470 80.556 1.03e-148 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01595 K09873 - gmx:100788583 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01595 1 19873849 19875304 Spst1g01595 1 19873849 19875304 ECH