Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01592 ATGGCTCCTGCTAAGGGATTACCCAGTCATAAGTCATATCCTATTATTCTTAGCCAATGCTCAAAGGAATACTGGTTTCCTGTTAATGATCTAACTACCTTTCTTCCTTGTGCAGTGGCCAATGCTAAAAAGGCTGATCCGAAAGCTCAGGCCTTGAAGACAGCTAAGGCTGTCAAATCAGGTGGCCAAGTGTTTAAGAAGAAAGCTAAAAAGATCAGGACATCTGTTACATTTCACAGGCCAAAGACATTGAAGAAAGACAGGAACCCTAAATATCCTCGCATTAGTGCTCCACCCAGAAACAAGTTGGACCATTATCAGATACTAAAATTTCCTCTAACCACCGAGTCTGCAATGAAGAAAATTGAGGATAACAACACTCTGGTATTTATTGTTGATCTCCGTGCTGACAAAAAGAAGATTAAATATGCTGTAAAGAAGATGTATGACATTCAGGCCAAGAAAGTGAATACTTTAATCAGGCCTGATGGAACGAAGAAAGCGTATGTTAGGTTGACTCCAGATTATGATGCCTTAGATGTAGCCAACAAGATTGGTATCATCTAA 567 0.3986 MAPAKGLPSHKSYPIILSQCSKEYWFPVNDLTTFLPCAVANAKKADPKAQALKTAKAVKSGGQVFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKYAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01592 188 ProSitePatterns Ribosomal protein L23 signature. 166 181 IPR001014 GO:0019843
Spst1g01592 188 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 105 181 IPR012678 GO:0003735|GO:0005840|GO:0006412
Spst1g01592 188 NCBIfam 50S ribosomal protein L23 112 188 IPR019985 GO:0003735|GO:0005840|GO:0006412
Spst1g01592 188 Pfam Ribosomal protein L23 108 170 IPR013025 GO:0003735|GO:0005840|GO:0006412
Spst1g01592 188 PANTHER 60S RIBOSOMAL PROTEIN L23A 41 188 IPR013025 GO:0003735|GO:0005840|GO:0006412
Spst1g01592 188 Gene3D - 69 188 IPR012677 -
Spst1g01592 188 FunFam 60S ribosomal protein L23a 68 188 - -
Spst1g01592 188 Hamap 50S ribosomal protein L23 [rplW]. 108 188 IPR013025 GO:0003735|GO:0005840|GO:0006412
Spst1g01592 188 Pfam Ribosomal protein L23, N-terminal domain 48 98 IPR005633 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01592 Spst-Chr1 19849396 19850413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01592 61 188 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 89.062 3.08e-67 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01592 K02893 - gmx:100777933 285.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01592 1 19849396 19850413 Spst1g01592 1 19849396 19850413 ECH