Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01591 ATGAGGGCTCATCCAATCTTTCGTGGGTTTTGCACTAATTCGATTTTTTTTATTCTTTGCGAAGTGGGTATGGTGGGTAACGACGACGCGGGTCATCTCTCCGCCTCCCGGAAAATGTTCTGGCGCTCGGCGTCGTGGTCCTCCTCCCGCACCGCCGCTGGGAACGCCCCTTCGGGCGAGGCGAATAAGGGTTTCGGGGATTCCAGCGGCGCAGAGGGTCCTCACGTCCAGAACCGCCGGTTCCCTCCGCCGCCACTGACGCCTCGGTCGCAGCAGAATTGTAAGGCGCGGTCGTGTCTGCCGCCTCTGCAACCGCTCTCCATCGCCCGGCGGAGTCTTGATGAGTGGCCAAAGGCGAGTTCCGATGACATCGGCGAGTGGCCGCAGCCGCCCACCACCCCCGGCGGGAGAGGTAATGGTAGCAATGGTGAAAGATTAAAACTTGATTTGTCTTCCATTCAGCATAACAACCCTGATCATAGTAGGAGTAGCAATGGTGGGCTTGTGAAGAGGGATAAGATTGCATTTTTCGATAAGGAGTGTTCAAAAGTTGCTGAGCATGTGTACCTTGGCGGTGACGCTGTTGCTAGGGATAGGGACATTTTGAAGCATAATGGGATCACTCATGTGTTGAATTGTGTGGGGTTTGTGTGTCCTGAGTACTTTAAGGCTGATTTTGTTTATAGGACTTTGTGGCTGCAGGATAGTCCCTCTGAGGACATTACTAGTATCTTGTATGATGTCTTTGACTACTTTGAGGATGTTAGGGAACAAGATGGGAGGGTGTTTGTGCACTGTTGTCAAGGGGTCTCTAGGTCTACATCTTTGGTCATTGCTTACCTTATGTGGAGGGAAGGGCAAAGTTTTGATGATGCTTTTCAGTTTGTGAAGGCGGCAAGAGGGATTGCGGATCCGAATATGGGTTTTGCTTGCCAGTTGTTGCAGTGCCAGAAAAGGGTCCACGCGTTCCCTCTTAGTCCTAGTTCTTTGTTGAGGATTTACAGGATTGCTCCACACTCACCGTATGATCCTTTGCATCTTGTTCCCAAAATGTTGATGGATCCTTCGTCAGCTGCATTGGACTCCAGAGGCGCGTTTATTGTGCACATTCCTTCGGCAATATATGTTTGGATTGGTAAGAGTTGTGAGGCCATCATGGAGAGGGACGCCAGAGGGGCGGTTGGCCAGATTGTTCGGTATGAGAAGGTGCAAGGACCAATTGTGATGATTAAGGAAGGTGAGGAACCGGCTTACTTCTGGGATGCTTTTTCAAATTTTCTGCCCTTGATGGATAAATCTGGTAATAGAGTAGAAGATGGAAAGTTAACTAGTAAAGTTTTGCCTGGTGAAAGGAGAGTGGAAGCATATGATGTTGATTATGAAGTTTTCAGAAAAGCAATCACGGGAGGATTTGTGCCTCCCTTTGCATCATCCGAGAATGAACATGAAACCCACCTGCCTGCCAGAGAGAGTAGTTGGAGTGCTTTAAGGCGTAAAGTTGCCTCTGCTAATATGAAGGAGTTTGTTTCTGCCCCTAGGTTATCCTTTCCAAGGGTTTATTCAGATTCCATGTTGTGTATTCATACATCAGCAAATTTGTCTCCATCCTCATCCCTTTCATCATCGTCATCAACTATATCATCATCCTCTTCACCGTCTTATGTTTCTCCTGATTCCATTTCTTCTGATTCTAGCACTCATTCTAAGTTTTTGTCAGAAGTGTCCCCAGATTCTTCCTCTCTGGTTTTGACTCCTATTCCTGTATCTTCATCTTTGTCTAATTTTTCTAATTTGTCAATCTCTTCAAATTCTACTTCTCAAACAGTGTCTAACAGTACAGATATCCTTGGTGTCAAGTTATCACATCCCTGGTCTCAGTCAGCCTCTTTACCATTGAAAAAACCGTCAGCTTCCCTTGCTGAACGCAGAGGTAGTTTGTCAAAATCTTTGAAGTTGCCCCTAAAGAATGATAAGAAGCAAGTAATGGATAAGCCGTTGACCTTTCATAATAGTCAAGAATATGACATTGTTGTTAATGGCAATGTTAGCTATTTGCAACAATCAGATAGTAAAGATTATCATCGTGAGTCTAACAACCATGCCAAGGATGGAGGTGTGAGTTCATTTCAAAAGTGTGATCTGGCATTATGTCCAACCATTGTTGACAGCATGCACCTCAAGGAATCATCGCTTGTTCGGAGCTCTGTTGGGCCTTTGATAGATAGTTCCTCAATTGAAGACATATTGCTTGGTCAATCTACAGCATTGAAGGGAACTAATGAGAGTGGCTTACTGCAGTTTAATGTCACACAGACTTCGGTATATCACTGGCCCAGTTTAGAAAAGATTGAGACATTTGGTACAGGTCATTTGGATTCTAAAGCTGCTTTTGTCATATTCTCTCCCAGTATGCATGTACATGAAGGGAACATGTTATATATTTGGGTAGGGAGGTCTTTCAACTGTGACGCTTCACATGTTCACTTGGATATTGATAAACAGTTAGATTGTGTAGGAGCTGTTGACTGGGATCATATTGGTTGTGATCTCCTTGTACAGTTTAGTTTGCCGAAGAATACAGTCGTCAAGATTGTTAAAGAGAACGAAGAACCTTCAGAGTTCCTTGCTTTGCTCAGTTCATTGTAG 2646 0.452 MRAHPIFRGFCTNSIFFILCEVGMVGNDDAGHLSASRKMFWRSASWSSSRTAAGNAPSGEANKGFGDSSGAEGPHVQNRRFPPPPLTPRSQQNCKARSCLPPLQPLSIARRSLDEWPKASSDDIGEWPQPPTTPGGRGNGSNGERLKLDLSSIQHNNPDHSRSSNGGLVKRDKIAFFDKECSKVAEHVYLGGDAVARDRDILKHNGITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQDGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQFVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRIYRIAPHSPYDPLHLVPKMLMDPSSAALDSRGAFIVHIPSAIYVWIGKSCEAIMERDARGAVGQIVRYEKVQGPIVMIKEGEEPAYFWDAFSNFLPLMDKSGNRVEDGKLTSKVLPGERRVEAYDVDYEVFRKAITGGFVPPFASSENEHETHLPARESSWSALRRKVASANMKEFVSAPRLSFPRVYSDSMLCIHTSANLSPSSSLSSSSSTISSSSSPSYVSPDSISSDSSTHSKFLSEVSPDSSSLVLTPIPVSSSLSNFSNLSISSNSTSQTVSNSTDILGVKLSHPWSQSASLPLKKPSASLAERRGSLSKSLKLPLKNDKKQVMDKPLTFHNSQEYDIVVNGNVSYLQQSDSKDYHRESNNHAKDGGVSSFQKCDLALCPTIVDSMHLKESSLVRSSVGPLIDSSSIEDILLGQSTALKGTNESGLLQFNVTQTSVYHWPSLEKIETFGTGHLDSKAAFVIFSPSMHVHEGNMLYIWVGRSFNCDASHVHLDIDKQLDCVGAVDWDHIGCDLLVQFSLPKNTVVKIVKENEEPSEFLALLSSL 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01591 881 Gene3D Protein tyrosine phosphatase superfamily 155 322 IPR029021 -
Spst1g01591 881 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 239 300 IPR000387 GO:0016311|GO:0016791
Spst1g01591 881 ProSitePatterns Tyrosine specific protein phosphatases active site. 264 274 IPR016130 GO:0016311|GO:0016791
Spst1g01591 881 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 175 321 IPR029021 -
Spst1g01591 881 MobiDBLite consensus disorder prediction 114 145 - -
Spst1g01591 881 Pfam Dual specificity phosphatase, catalytic domain 188 318 IPR000340 GO:0008138|GO:0016311
Spst1g01591 881 SMART dsp_5 180 319 IPR020422 GO:0006470|GO:0008138
Spst1g01591 881 ProSiteProfiles Dual specificity protein phosphatase domain profile. 180 322 IPR020422 GO:0006470|GO:0008138
Spst1g01591 881 CDD DSP 181 315 - -
Spst1g01591 881 MobiDBLite consensus disorder prediction 532 560 - -
Spst1g01591 881 PANTHER MKPA PROTEIN 35 878 - -
Spst1g01591 881 Gene3D Severin 343 427 IPR029006 -
Spst1g01591 881 SUPERFAMILY Actin depolymerizing proteins 783 879 - -
Spst1g01591 881 MobiDBLite consensus disorder prediction 49 98 - -
Spst1g01591 881 SUPERFAMILY Actin depolymerizing proteins 328 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01591 Spst-Chr1 19826861 19831277 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01591 25 216 Protein tyrosine phosphatase (PTP) family AT3G55270 61.458 1.68e-65 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01591 - - vum:124838930 1533.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01591 1 19826861 19831277 Spst1g01591 1 19826861 19831277 ECH