Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01572 ATGGACAAGCTAGAACTGGACGGCATCCCTACTACGACTAGATCTTTTCTCCAGGTCGCTGCGACGGAGGAGGCTGCGCCGCCTCTAAGAGTCGTCCAAATTGAAGGACTGGTTATCCTTAAGATAATTAAGCACTGTAAGGACCACTCGCCTTCTTTGGTCACTGGACAACTTCTTGGGCTGGATGTTGGCAGTGTTCTTGAAGTTACCAACTGCTTCCCCTTTCCAATGAGGGAAGAGGATGAGGAAATTGAAGCTGATGGTGCTAATTACCAGCTTGAAATGATGAGATGCCTGAGGGAGGTTAATGTTGACAACAACACTGTTGGATGGTACCAATCTACATTGCTCGGTTCCTTTCAGACTGTGGAGCTTATTGAAACCTTTATGAATTACCAGGAGAATATTAGACGCTGTGTTTGCATAATATATGATCCGTCGAGGTCTGATCAAGGTGTTCTAGCTCTGAAGGCCCTGAAACTTTCTGATTCGTTCATGGAACTCTATCGCAGCAATAATTTTACTGGAGAGAAATTGAGGGAGAAGAACTTGTCATGGGTGGATATCTTTGAGGAAATACCGATTAAAGTTTCAAATTCTGCCCTTATCAGTGCTTTTATGACAGAGCTGGAACCTGATACTCCAGTCACTCAGTGTGATTACGATCGCTTGCAATTGTCAACAAGTTCATTAATGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCATTAGAACAACAAAAGTTCCAATTCTTCTATAGGAGCTTGTCTCGTCAACAAGCTCAGCAGCAAGCATGGCTTCAAAAGAGAAGGGCGGAGAACATGGCTCGTAAATCTGCTGGAGAAGAACCCTTGCCCGAGGAAGATCCTTCAAATCCCATTTTCAAGCCACTCCCCGAGCCATCACGCTTGGAGAGCTTCCTCATTACAAATCAAATTTCCAACTACTGCAATCAAATCAATGGGGTGTCAGGGCAGAGCTTTAACAGACTCTATTTGATGAAGGCTTTGCATGAGGATTGA 1035 0.4406 MDKLELDGIPTTTRSFLQVAATEEAAPPLRVVQIEGLVILKIIKHCKDHSPSLVTGQLLGLDVGSVLEVTNCFPFPMREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTVELIETFMNYQENIRRCVCIIYDPSRSDQGVLALKALKLSDSFMELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVTQCDYDRLQLSTSSLMERNVEFLIECMDDLSLEQQKFQFFYRSLSRQQAQQQAWLQKRRAENMARKSAGEEPLPEEDPSNPIFKPLPEPSRLESFLITNQISNYCNQINGVSGQSFNRLYLMKALHED 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01572 344 Pfam C-terminal region of eIF3h 151 343 IPR045810 -
Spst1g01572 344 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 27 344 IPR027524 GO:0003743|GO:0005737|GO:0005852
Spst1g01572 344 ProSiteProfiles MPN domain profile. 32 165 IPR037518 -
Spst1g01572 344 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 30 133 IPR000555 GO:0005515|GO:0008233|GO:0008237
Spst1g01572 344 FunFam Eukaryotic translation initiation factor 3 subunit H 11 220 - -
Spst1g01572 344 Gene3D Cytidine Deaminase, domain 2 9 221 - -
Spst1g01572 344 SMART pad1_6 31 164 IPR000555 GO:0005515|GO:0008233|GO:0008237
Spst1g01572 344 MobiDBLite consensus disorder prediction 275 300 - -
Spst1g01572 344 CDD MPN_eIF3h 30 293 IPR027524 GO:0003743|GO:0005737|GO:0005852
Spst1g01572 344 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 23 328 - -
Spst1g01572 344 MobiDBLite consensus disorder prediction 275 289 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01572 95 344 Eukaryotic Initiation Factors Gene Family AT1G10840 84.400 1.28e-157 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01572 K03247 - gmx:100795273 645.966