Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01556 ATGGCAGCGGCGTTCCAGGAGAGTGGAGGTGGAGATGAGGATGCGACCATCGACGTGCACACCACGCGTGGCACTCCCATCCGCTACCTCCCGCTCGATCACCTCTACTCCGCCACGTCGCCCTGCCGCGTCACCGCCAGCGGCTCCTCCAACGTCATGTCCAAGAAGGTCAAGGCTCGCAAACTCACCACGCTTGCGGCGCATCACCATTTCAACAACCACGACCACAAGAAAACGACGTCGTCCTCTTCGTCCTCCTCGCAGCCTCTTCCTTCGAAGCCCCCTCTTCTCTTCGTCTACTCGCGCCGGCGCAAGAGGCATTCCCCTTCCACGGCGCCGTTTTACGATTCGCTGTGTAAAACCGAGGGCAGGGTGAACGAGGAAGAGAATGAGAACGAAAAGAGGCTGCTGAAGAAGAGGAAAATTGGGAGTACCGAGTTGGAGAGGCTGGGCGTTGATTTGAACACTGCGATTGGGGATGTTGACGGACCTCGATTGAGGGAATGCCGAAACCAATTTGGGAATTCTGGTGCTGCTTTGAATATTAAGTGTGGTTCCTTGGAGAATATGCCAAAAATGTCGCCTGATTCTCGCCCTGTGAAGAAATGGGTCGGTTCTGTGGATAGGATGTTGAGTTTTGATAATGCTGATCCTGAGGTGTTTGTTGGATTACGATGCAAGGTTTATTGGCCCATGGATTTAAAAGCGTACACTGGTTATGTCAGAAGTTATGACAAGGAAACTAAGATACATCATGTCAAGTATGATGATGGTGATGAGGAAAATTTAATTCTTTCAAATGAAAATATAAGATTCCATGTTTCCCGCGACGAGGTGAAACATTTAAAATTGAATTTTGCCAAAGTTCGTGACAATAATGTCTCTGATTATGATGTTGAAGAGATGCTTGCAATGGCTGCAAGTTTGGATGATTGTCAAGACTTTGAGCCTGGGGATATCATATGGGCCAAGTTAACAGGCCATGCAATGTGGCCAGCTGTTGTTTTAGATGAATCACTTGCTAGCAACTGTAAGGGTTTAAAGATGATGATGGGAGGAAGATCAGTTCCTGTCCAGTTTTTCGGCACCCATGACTTTGCAAGGGTTAGAGTGCAACAGGTGAAATCATTTCTCAGTGGACTTCTTACTGATCTACACTCAAAATGCAAGAAACATAGTTTTATTGAAGGTTTAGAAGAGGCAAAAAGATATTTAAGTGAGCAGAAGCTTCCTCTGGAGATGCTAGAGTTGCAAAAAAGGTGTGCAGCTGATAACTGTAACAATGTAAGTGGAGAGGATGGAGGATGTACAGATTCAGGCGATGATTGTGTAAATGGTGAGAGAAATTTAATGGCTCTGGAAAGCGTTGAAACTTTTCCTTATGAAGTGGGAGGCCTCCAAATTCTAAGCCTTGGAAAAATAGTTAAAGATTCTGCATTCAGGGATGGAAGGTTCATCTGGCCTGAAGGGTACACTGCAGTGAGGAAGTTTACTTCAGTTACTGACCCAAAAGTTTTTGCTCCTTACAAGATGGAGGTGTTGAGAGATCCAGAATCCAAAGTTCGTCCTCTATTTAGAGTGACAGTTGATGGGGGAGAGCAGTTCAATGGTAATACTCCATCTGCTTGTTGGAGTGAGGTATATGAAAGGATAAAGAAAATGGAAAAGGATGCTTCTGAAGGTACTCTTGCTGAAGGTGGGCTAGGAAAGGGCTACGAATCTGGCTCTGATATGTTTGGTTTCTCCAATCCTAAAGTGCTTAAACTTATACAGGGTTTGTCTAAATCCAAAATCTCTTCAAAGAACTCATTTTGCAAGTTAGGTTCCAGAAGACATAATAACTTGCCTCTTGGTTATAGACAAGTTCATATTAACTGGTTTGACCTTGATAAGTGCAACGTATGCCACATGGATGAGGAGTATGAGAACAATCTGTTTCTGCAGTGCGACAAATGCAGAATGATGGTCCATGCTAGATGTTATGGAGAACTGGAACCCATTAATGGGGTTCTATGGTTATGCAACTTATGTCGTTCAGGCGCTCCTCCTCCACCTTGCTGCTTATGTCCACTCATAGGTGGTGCAATGAAGCCTACTACAGATGGCCGGTGGGCTCATTTGGCTTGTGCCATGTGGATACCTGAAACTTGCTTAGCTGATGTAAAGAAAATGGAGCCTATTGATGGTTTGAGTAGAATCAGTAAGGACCGCTGGAAGTTGCTATGCAGCATATGTGGTGTATCTTATGGTGCCTGCATCCAATGTTCAAATAATTCTTGTCGAGTAGCGTATCATCCACTCTGTGCACGTGCTGCCGGTCTGTGTGTTGAGCTTGAAAATGAGGACAGGCTCTATCTACTTTCTGTTGATGATGATGAAGATCAGTGTATACGCTTACTTTCTTTCTGCAAGAAACATAGGCAGCCATCTAATGAACATTCTGTTGCTGATGACCGTATAGCTCGAGTTGCTGGTCTATGTTCAGAATATGAACCACCACCCAATCCGTCTGGTTGTGCACGAAGTGAACCATATGATTACTTTGGCAGGAGAGGTCGAAAAGAACCTGAAGCGCTTGCAGCTGCATCATTAAAACGATTGTTTGTGGAGAATCAGCCTTATTTAGTAGGTGGATACTGCCAACATGGATCATTAAATGATCCAGAGCCTTCTGGCAGAGGAGTCTGCTCTAAATTCTTTTGTAGCCAACAAAGGCTGAGAACCTCTCTGATTGACTCATCAAACAACATACTTTCTATATCTGAAAAATATAAGTTTATGAGGGAAACTTTTCGGAAGCGGCTGGCATTTGGGAAATCAAGAATTCATGGATTTGGCATCTTTGCAAAGCATCCACATAAAGGTGGAGACATGGTGATTGAATACACTGGTGAACTAGTTAGACCACCAATAGCTGACCGGAGGGAGCATTTTATATACAATTCGTTGGTGGGTGCTGGAACATATATGTTTCGGATTGATGATGAACGAGTCATTGATGCTACTAGAGCAGGAAGCATTGCTCATTTAATTAATCATTCATGTGCACCATTTCCTCTCAAGATTTTATTGTTCTGGCTGAACCCTGACTTTTACAATGTTGCTCATCCTGTTATTTCTCCTCTTAAACCAAATTGCTATTCAAGAGTTATAAGTGTCAATGGCGATGAGCATATCATAATATTTGCGAAGAGGGACATTAAACAGTGGGAAGAGCTTACATATGATTATAGATTTTTCTCAATTGATGAACGGCTTGCTTGTTACTGTGGCTTCCCAAAGTGCCGAGGTATAGTAAATGATACAGAGGCAGAAGAGCGAGCTGCTACCCTATATGCACCACGAAGGTTACAGCTCGGAGAAATCCTTGCAGAGTTAATAGCTGTCACGCTTCTCCTCTCTTACCCCGTGACTATTGCGTGA 3423 0.4403 MAAAFQESGGGDEDATIDVHTTRGTPIRYLPLDHLYSATSPCRVTASGSSNVMSKKVKARKLTTLAAHHHFNNHDHKKTTSSSSSSSQPLPSKPPLLFVYSRRRKRHSPSTAPFYDSLCKTEGRVNEEENENEKRLLKKRKIGSTELERLGVDLNTAIGDVDGPRLRECRNQFGNSGAALNIKCGSLENMPKMSPDSRPVKKWVGSVDRMLSFDNADPEVFVGLRCKVYWPMDLKAYTGYVRSYDKETKIHHVKYDDGDEENLILSNENIRFHVSRDEVKHLKLNFAKVRDNNVSDYDVEEMLAMAASLDDCQDFEPGDIIWAKLTGHAMWPAVVLDESLASNCKGLKMMMGGRSVPVQFFGTHDFARVRVQQVKSFLSGLLTDLHSKCKKHSFIEGLEEAKRYLSEQKLPLEMLELQKRCAADNCNNVSGEDGGCTDSGDDCVNGERNLMALESVETFPYEVGGLQILSLGKIVKDSAFRDGRFIWPEGYTAVRKFTSVTDPKVFAPYKMEVLRDPESKVRPLFRVTVDGGEQFNGNTPSACWSEVYERIKKMEKDASEGTLAEGGLGKGYESGSDMFGFSNPKVLKLIQGLSKSKISSKNSFCKLGSRRHNNLPLGYRQVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPINGVLWLCNLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKKMEPIDGLSRISKDRWKLLCSICGVSYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRQPSNEHSVADDRIARVAGLCSEYEPPPNPSGCARSEPYDYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQHGSLNDPEPSGRGVCSKFFCSQQRLRTSLIDSSNNILSISEKYKFMRETFRKRLAFGKSRIHGFGIFAKHPHKGGDMVIEYTGELVRPPIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPFPLKILLFWLNPDFYNVAHPVISPLKPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLACYCGFPKCRGIVNDTEAEERAATLYAPRRLQLGEILAELIAVTLLLSYPVTIA 1140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01556 1140 CDD ePHD_ATX1_2_like 692 806 IPR041956 -
Spst1g01556 1140 Pfam PWWP domain 318 405 IPR000313 -
Spst1g01556 1140 ProSiteProfiles FYR domain FYRN motif profile. 458 516 IPR003888 GO:0005634
Spst1g01556 1140 Pfam SET domain 944 1077 IPR001214 GO:0005515
Spst1g01556 1140 SUPERFAMILY FYVE/PHD zinc finger 623 693 IPR011011 -
Spst1g01556 1140 CDD Tudor_Agenet_AtEML-like 222 272 - -
Spst1g01556 1140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 678 809 IPR013083 -
Spst1g01556 1140 SMART PHD_3 631 678 IPR001965 -
Spst1g01556 1140 SMART PHD_3 741 807 IPR001965 -
Spst1g01556 1140 SUPERFAMILY Tudor/PWWP/MBT 311 411 - -
Spst1g01556 1140 CDD SET_SETD1-like 921 1096 - -
Spst1g01556 1140 ProSiteProfiles FYR domain FYRC motif profile. 520 606 IPR003889 GO:0005634
Spst1g01556 1140 SMART set_7 933 1084 IPR001214 GO:0005515
Spst1g01556 1140 MobiDBLite consensus disorder prediction 78 92 - -
Spst1g01556 1140 Gene3D SET domain 886 1113 IPR046341 -
Spst1g01556 1140 ProSiteProfiles Extended PHD (ePHD) domain profile. 683 807 IPR034732 -
Spst1g01556 1140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 623 677 IPR013083 -
Spst1g01556 1140 MobiDBLite consensus disorder prediction 68 95 - -
Spst1g01556 1140 Pfam F/Y-rich N-terminus 464 513 IPR003888 GO:0005634
Spst1g01556 1140 CDD PWWP_AtATX1-like 316 411 - -
Spst1g01556 1140 SMART fyrn_3 472 516 IPR003888 GO:0005634
Spst1g01556 1140 Pfam F/Y rich C-terminus 522 595 IPR003889 GO:0005634
Spst1g01556 1140 Pfam PHD-finger 644 678 - -
Spst1g01556 1140 Gene3D - 304 416 - -
Spst1g01556 1140 SUPERFAMILY SET domain 930 1097 IPR046341 -
Spst1g01556 1140 ProSiteProfiles PWWP domain profile. 317 380 IPR000313 -
Spst1g01556 1140 ProSiteProfiles Zinc finger phorbol-ester/DAG-type profile. 611 674 IPR002219 -
Spst1g01556 1140 CDD PHD_ATX1_2_like 631 677 IPR042010 -
Spst1g01556 1140 ProSiteProfiles Zinc finger PHD-type profile. 629 680 IPR019787 -
Spst1g01556 1140 ProSiteProfiles Post-SET domain profile. 1084 1100 IPR003616 -
Spst1g01556 1140 Gene3D - 459 598 - -
Spst1g01556 1140 SMART PWWP_4 315 378 IPR000313 -
Spst1g01556 1140 Pfam PHD-zinc-finger like domain 685 806 - -
Spst1g01556 1140 FunFam Histone-lysine N-methyltransferase 681 809 - -
Spst1g01556 1140 ProSitePatterns Zinc finger PHD-type signature. 632 677 IPR019786 -
Spst1g01556 1140 PANTHER PHD FINGER PROTEINS 55 1112 - -
Spst1g01556 1140 Gene3D - 218 273 - -
Spst1g01556 1140 ProSiteProfiles SET domain profile. 933 1078 IPR001214 GO:0005515
Spst1g01556 1140 SMART fyrc_3 524 618 IPR003889 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01556 Spst-Chr1 19347498 19358999 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01556 632 777 C2H2 Transcription Factor Family AT3G14740 40.397 3.31e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Spst1g01556 SET 2.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01556 - - gmx:100806736 1988