Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01550 ATGCAACTTAGTTCAACGGCCCATATGCATTCTGATGAGATCAGACGGTCCAGGAGAACTGTATATTGCCCCTCTCACGGATTTCGATGTTTCGCTTTCGGACCAAACGTGGGCCCCACATCGTACTGTGTCCTCAGTGCTGGCTCCTCACAAAGGCGGGAACCAGTTTTTTGTCGCAGAGCACCTAAATCCAATGACATTGTGCAGTTTCTGAGGAGCGTTTTTTTTGTGTCTGTTCTAGTTGCTGTTATTGTTGTTGTGGTTCAATGGGGTTGTGGTTTATTTTTGGTTTTTCTTTTGGAGGTTCAAATTCTTGTTCTGATTCTTGAGAAGGTGGAAAATTTGTTGAGGAAGATGCTTATGCTTATTCTTGTGCTCGTCCTTGAACTTTATTTAACCCATTTTAGCATCAAGTATAAAAAGTTGTTCTTGGACTTGTTTCCAAGTGTTGAGGTGATGGGGGGTTTGAGCATGCACATCCCTTCTTCTCTTGCTAGGGAATTGTTGGCAATTCAGCCACTTTTTATTCTCTTCCTGTTCAGCTTGCACCACAACACTGTGCAGTGTCAAGGAAGGTTGAGTAAGCATGTTTCTTCAGAGCCTCCCTCCCCTTCCAGGCCGTCATCACCATCATCATCAGCTTACAAGGATGACCCCAGGATGATCATTTTGAGCATGGTTTTAGGAGCAGCCACTGGATTAGTTTGTTCTGTTCTCTTTGCACTTGTGGTCCGTTGTGTGGTGCAGTACCTGAACCGCACACCAATCCTCAAGGGACCTGTCATATTCTCCCCCAAAATTGCCCCCAAGACACTCCAATCAGCTTTGGCGAAGGAAAACCACTTACTTGGCTCGAGTCCTAATGGGAAATACTACAAAACTGTGCTTGACAATGGACTCACTATTGCAGTGAAAAGGCTAACACCCTTTGAGAGCAACTCTCCAGAGGCTAAGAGAAAATCAGTGAAGAGGCAGATACAAACGGAGCTAGAGCTTCTTGCAAGCTTAAGACACAGGAACTTGATGAGTTTGAGGGCCTATGTTCGTGAGCCTGATGGTTTCTCATTGGTTTATGATTATGTGTCCACTGGGAGTCTTGCTGATGTGATGAATAGAGTGTGGGAGAATGAGTTGCCCTTTGGTTGGGAAGTTAGGCTCAGGATTGCTGTCGGTGTGGTGAAGGGTCTTCAGTATCTTCACTTCACTTGTGTGCCTCAGACTCTGCACTACAACTTGAAGCCCACAAATGTGATGCTGGATGGTGAGTTTGAACCCAGATTAGCAGACTATGGCTTGGCCAAACTTCTACCTAACTTGGATAGAGGAACTTCTCTCTACACACCTCCAGAATGTTTCCATAATTGCAGCAGGTACACTGATAAAAGTGACATCTTCAGTTTTGGCATGATACTAGGTGTTTTGTTAACGGGTAAGGACCCTACAGATCCATTCTTTGGGGAAGCAGCCAGTGGGGGAAGTTTGGGGTGTTGGCTGAGACATTTGCAGCAAGCGGGGGAGGCGCGTGAGGCCCTAGATAAGAGCATGTTAGGGGAAGAAGGGGAGGAAGATGAGATGCTAATGGCTGTTAGGATTGCTGCTGCATGCCTCTCTGATATGCCTGCAGATAGACCCTCTAGTGACGAGCTAGTTCACATGCTAACGCAACTGCACAGTTTTTGA 1680 0.4607 MQLSSTAHMHSDEIRRSRRTVYCPSHGFRCFAFGPNVGPTSYCVLSAGSSQRREPVFCRRAPKSNDIVQFLRSVFFVSVLVAVIVVVVQWGCGLFLVFLLEVQILVLILEKVENLLRKMLMLILVLVLELYLTHFSIKYKKLFLDLFPSVEVMGGLSMHIPSSLARELLAIQPLFILFLFSLHHNTVQCQGRLSKHVSSEPPSPSRPSSPSSSAYKDDPRMIILSMVLGAATGLVCSVLFALVVRCVVQYLNRTPILKGPVIFSPKIAPKTLQSALAKENHLLGSSPNGKYYKTVLDNGLTIAVKRLTPFESNSPEAKRKSVKRQIQTELELLASLRHRNLMSLRAYVREPDGFSLVYDYVSTGSLADVMNRVWENELPFGWEVRLRIAVGVVKGLQYLHFTCVPQTLHYNLKPTNVMLDGEFEPRLADYGLAKLLPNLDRGTSLYTPPECFHNCSRYTDKSDIFSFGMILGVLLTGKDPTDPFFGEAASGGSLGCWLRHLQQAGEAREALDKSMLGEEGEEDEMLMAVRIAAACLSDMPADRPSSDELVHMLTQLHSF 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01550 559 SUPERFAMILY Protein kinase-like (PK-like) 280 553 IPR011009 -
Spst1g01550 559 Pfam Protein kinase domain 279 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01550 559 Gene3D Phosphorylase Kinase; domain 1 266 360 - -
Spst1g01550 559 MobiDBLite consensus disorder prediction 193 214 - -
Spst1g01550 559 CDD STKc_IRAK 283 556 - -
Spst1g01550 559 Gene3D Transferase(Phosphotransferase) domain 1 361 558 - -
Spst1g01550 559 ProSiteProfiles Protein kinase domain profile. 277 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01550 559 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 361 558 - -
Spst1g01550 559 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 269 360 - -
Spst1g01550 559 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 179 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01550 Spst-Chr1 19270503 19273349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01550 187 556 Receptor kinase-like Gene Family AT2G31880 31.796 1.26e-61 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Spst1g01550 Pkinase 8.9e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01550 - - gmx:102664273 724.546