Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01549 ATGACTCCCTTGCAACCTACAAACCGAACTGATCCTGAAGGACTTGGGGAGGCCTATGATGGAGACATTGCATTTGCTAGTGCCCTAGAAACATTTGGTGGTGGACATAATGACCCAATCAGTGTGGCTTTTGGAGGCCCTGTTATGACCAAATTCACCATAGCCCTTAGAGAAATAGGGACATACAAGGAAGTTCTTCGATCACAGGTTGAGCATATGTTAAATGACAGATTGATTCAGTTCGTCAATATGGATTTGCAAGAGGTCAAGGAAGCACGGAAACGTTTTGACAAGGCTAGCCTTATCTATGACCAGACTCGTGAGAGGTTTCTGTCACTAAGAAAAGGCACAAAAACTGATGTAGCTACTGCACTAGAAGAGGAGCTTCATAGTGCAAGATCTACATTTGAGCAAGCTCGGTTTAATCTGGTAACTGCCTTGTCAACTGTTGAAGCAAAGAAGAGATTTGAATTTTTGGAAGCAGTCAGTGGGACCATGGATGCACATCTTCGTTATTTCAAACAGGGGTACGAGTTGTTGCACCAAATGGAGCCATATATCAACCAGGTCTTGACTTATGCTCAGCAATCAAGAGAAAGGTCCAATTATGAGCAGGCAGCCCTAAATGAAAGAATGCAAGAGTACAAACGACAGATTGATCGGGAGAGTAGGTGGGCATCAAATGGTTCTAATGGGTCTCCTAATGGAGATGGTATACAAGCCATTGGTAGAAGTTCACATAAGATGATAGAGGCAGTCATGCAATCTGCTGCAAAGGGAAAGGTTCAAACAATTCGACAAGGTTATCTCTCAAAGCGATCCTCAAATTTAAGGGGGGACTGGAAAAGGAGATTTTTTGTTCTTGATAGTCGGGGAATGCTATATTACTACCGTAAACAGTGCAGCAAATCATCTGGGTCCAGTAGTCAACATTCTGGCCAGAGGAATAGTTCTGAGCTTGGTTCTGGACTTTTAAGTCGATGGCTGTCTTCTCATCACCATGGTGGAGTACATGATGAAAAATCTGTTGCTCATCACACTGTGAACCTGCTTACATCAACAATCAAAGTAGATGCTGACCAATCAGATTTGAGGTTTTGCTTCAGGATCATTTCACCAACAAAGAACTATACTTTGCAGGCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTTATTGCCTCATTACTGAGTTCTCAGATTCCTGAAAGGATGTTGCCTGCGAGCCCAATGGGAAGTGGTCATCATAGGTCTACCAGTGAGAGTAGTTCTTTTGAGAGTTCAGATTTTGATCACTCTGCTGTTGAAGAATGTGCAGCAGATAGAAGTCTTGCTTCTGCACATCTGGAGCGACCCTCAAGAAGTTTACAACAGCAGCGATCCTGCACTAAAAATGAAAAACCAATTGATGTGCTGCGAAGAGTTTGTGGGAATGATAAATGTGCTGATTGTGGTGCTACTGAACCTGATTGGGCATCACTAAATCTTGGTGTTCTTGTTTGCATTGAGTGTTCTGGCGTGCACCGGAACCTTGGTGTGCACATATCAAAGGTCAGGTCTCTTACTTTGGATGTTAAAGTGTGGGAACCTTCTGTCATAAGTTTATTTCAGTCTCTTGGGAATACTTTTGCCAACTCAGTCTGGGAAGAATTATTACAATCAAGAAGTGCCATTCAGGTTGATCTTGTCCCTACAGGCTTAAGCAAGTCTGATAAACCGCCGTTGATGTTCTTCTTCCCCAAACCTTGTCAATCTGATTCTCTATCAGTGAAGGAAAAGTTCATTCATGCAAAGTATGCAGAGAAGCTTTTTGTTCGCAAGCCAAAGGACAACCGTCTCTTGGTGGCACAACAAATATGGGAGGCTGTTCATGCTAATGACAAAAAAGCTGTATATCGGTACATTGTTAATTCTGACGTTGATGTTAATGTTGCATATGAGCAAATGTGCAACAGCTCCCTAACCCTTGCCAAAGTAATGCTATTACAAGAGCAGACTAGCCATGATCACAGCTCTACATTAGCAGGGAACACGTTGGACTGGTCCCCTAGTAAAGAAGGCCAGGTCATGGACAATCTAGATGGGTGCACCCTACTTCACCTTGCATGTGAAACTGCAGATATTGGCATGGTTGAGCTCCTCCTACAGTATGGTGCAAATGTTAATGCAACTGATTCAAGAGGTCAAACGCCACTACATCGCTGTATTCTCAAAGGCAGATCTGCGTTTGCAAGACTATTGCTTTCAAGGGGAGCCGATCCTCGAGCTGTGGATGAGCAGGGAAGAACCCCAATTGAGCTTGCTGCAGAGTCAAATGCTGGTGAAAGAGATAACCATGCTCCATTAAATGATTCTAATGGATGA 2379 0.4338 MTPLQPTNRTDPEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLIQFVNMDLQEVKEARKRFDKASLIYDQTRERFLSLRKGTKTDVATALEEELHSARSTFEQARFNLVTALSTVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSSSQHSGQRNSSELGSGLLSRWLSSHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERMLPASPMGSGHHRSTSESSSFESSDFDHSAVEECAADRSLASAHLERPSRSLQQQRSCTKNEKPIDVLRRVCGNDKCADCGATEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEELLQSRSAIQVDLVPTGLSKSDKPPLMFFFPKPCQSDSLSVKEKFIHAKYAEKLFVRKPKDNRLLVAQQIWEAVHANDKKAVYRYIVNSDVDVNVAYEQMCNSSLTLAKVMLLQEQTSHDHSSTLAGNTLDWSPSKEGQVMDNLDGCTLLHLACETADIGMVELLLQYGANVNATDSRGQTPLHRCILKGRSAFARLLLSRGADPRAVDEQGRTPIELAAESNAGERDNHAPLNDSNG 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01549 792 Pfam PH domain 265 398 IPR001849 -
Spst1g01549 792 Pfam Ankyrin repeats (many copies) 702 753 IPR002110 GO:0005515
Spst1g01549 792 CDD PH_ACAP 266 403 - -
Spst1g01549 792 SUPERFAMILY ArfGap/RecO-like zinc finger 470 612 IPR037278 -
Spst1g01549 792 ProSiteProfiles ARF GTPase-activating proteins domain profile. 471 617 IPR001164 GO:0005096
Spst1g01549 792 Pfam BAR domain of APPL family 47 203 IPR004148 GO:0005515|GO:0005737
Spst1g01549 792 SMART arf_gap_3 471 617 IPR001164 GO:0005096
Spst1g01549 792 SUPERFAMILY BAR/IMD domain-like 19 286 IPR027267 -
Spst1g01549 792 ProSiteProfiles Ankyrin repeat profile. 699 731 IPR002110 GO:0005515
Spst1g01549 792 Gene3D - 616 780 IPR036770 -
Spst1g01549 792 MobiDBLite consensus disorder prediction 409 432 - -
Spst1g01549 792 Pfam Putative GTPase activating protein for Arf 474 612 IPR001164 GO:0005096
Spst1g01549 792 CDD BAR_SFC_plant 13 186 IPR035670 -
Spst1g01549 792 SMART PH_update 264 401 IPR001849 -
Spst1g01549 792 MobiDBLite consensus disorder prediction 759 792 - -
Spst1g01549 792 SMART ANK_2a 732 761 IPR002110 GO:0005515
Spst1g01549 792 SMART ANK_2a 699 728 IPR002110 GO:0005515
Spst1g01549 792 Gene3D Arf GTPase activating protein 451 615 IPR038508 -
Spst1g01549 792 Coils Coil 198 218 - -
Spst1g01549 792 MobiDBLite consensus disorder prediction 219 241 - -
Spst1g01549 792 ProSiteProfiles Ankyrin repeat region circular profile. 699 730 - -
Spst1g01549 792 SMART 5bar 3 189 IPR004148 GO:0005515|GO:0005737
Spst1g01549 792 ProSiteProfiles PH domain profile. 263 399 IPR001849 -
Spst1g01549 792 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 453 618 - -
Spst1g01549 792 ProSiteProfiles Ankyrin repeat profile. 732 764 IPR002110 GO:0005515
Spst1g01549 792 SUPERFAMILY Ankyrin repeat 633 777 IPR036770 -
Spst1g01549 792 CDD ArfGap 474 604 - -
Spst1g01549 792 PANTHER CENTAURIN/ARF 12 782 IPR045258 GO:0005096
Spst1g01549 792 MobiDBLite consensus disorder prediction 224 240 - -
Spst1g01549 792 Gene3D Arfaptin homology (AH) domain/BAR domain 12 222 IPR027267 -
Spst1g01549 792 ProSiteProfiles Ankyrin repeat region circular profile. 732 764 - -
Spst1g01549 792 PRINTS HIV Rev interacting protein signature 483 502 IPR001164 GO:0005096
Spst1g01549 792 PRINTS HIV Rev interacting protein signature 502 519 IPR001164 GO:0005096
Spst1g01549 792 PRINTS HIV Rev interacting protein signature 525 546 IPR001164 GO:0005096
Spst1g01549 792 SUPERFAMILY PH domain-like 264 415 - -
Spst1g01549 792 MobiDBLite consensus disorder prediction 418 432 - -
Spst1g01549 792 Gene3D - 256 409 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01549 Spst-Chr1 19259177 19268079 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01549 468 623 C2H2 Transcription Factor Family AT3G07940 38.750 1.37e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01549 K12489 - gmx:100789134 1417.14