Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01547 ATGGCTCTGGACCAGCCTTCCAACCCCAACGCCGTTGACGGGGCGGGTAACGGTGCTACGCCGTGCTCCGCCGCCGAAGGAGCCGATGACGGGAGGCCGGCGGCGAGGCTGCCGCGCTGGACGCGGCAGGAGATTCTGGTGCTGATTCAGGGGAAGAGCGACGCGGAGAACCGGTTCAGACCGGGTCGGGGGAGCGGTTCGGCGTTTGGTTCGAGCGAACCAAAATGGGCGCTGGTCTCGGCGTACTGCAAGAAGCACGGCGTGAACCGGGAGCCGGTGCAGTGCCGGAAACGGTGGAGCAACCTCGCCGGCGATTACAAGAAGATCAAGGAGTGGGAGTCGCAGGTCAGAGACGAAACAGAGTCGTTTTGGCTCATGAGGAACGATTTGAGGAGGGAGAGGAAATTGCCCGGTTATTTTGATAGGGAAGTGTATAATATTCTCGATTCGCCGTCCACGGCGGCTGCTGCGACGGCGGAGACTCCGACGGCGGCGGTGGAGGCGCCTGGGGAGGAGGAAGTGCACCTGTATGATAGTAATCGGAGAGTTGGGAGTGATGATGGGTTGTTCTCTGATTGTGAGAAGGAGGAGGTTTTGCTTTTAGCCCCTGGCAAGGATGTTCCTGCACCTGTTCCTATATCAGAGAAGCAATTTCAACCGCTCCTTCAACTCTGTGAAGGGGAAGGCAATGCTCAAGGTACTACCAATGAGAAACGGGCAACCCCGAATCCAGAAATGGGTTCTACATCACAAGGGGGACGGAAGAGGAAGAGATTTGCAACCGAAGCAGAGGAGGAAACATTGCAAAGTCAATTAATTGACGTCTTAGAAAAGAATGGCAAAATGCTTCGTGATCATCTTGAAGCTCAGAACACCAATTTCCAGTTGGACCGGCAGCAGCAGAGAGACACTGCAACTAACATAGTTGCTGTACTTGATAAGCTTGCAGATGCTCTAGGGAGAATTGCTGATAAATTTGCATGCGAGGAGTTCTATTGGGAGGAGGAGAGAGAGTGGGGCCGACCCACGGTCAAGGAAATGGAGGGAACTGGGCTTTGGCCCACAAACCATTCCCTCTTTACACTTGTCTCTCAGCTAGGGTTTTCAGTTCGCCACCAAATCCAACTCAACTCCACGCCCCTGCAAATGGTCCTCTTCGTCTTCGATACTCCGATTCCGAGATCGAGCATTCGTGCCGCGATAATGCAAAACCATACCTACTCTTAG 1227 0.5436 MALDQPSNPNAVDGAGNGATPCSAAEGADDGRPAARLPRWTRQEILVLIQGKSDAENRFRPGRGSGSAFGSSEPKWALVSAYCKKHGVNREPVQCRKRWSNLAGDYKKIKEWESQVRDETESFWLMRNDLRRERKLPGYFDREVYNILDSPSTAAAATAETPTAAVEAPGEEEVHLYDSNRRVGSDDGLFSDCEKEEVLLLAPGKDVPAPVPISEKQFQPLLQLCEGEGNAQGTTNEKRATPNPEMGSTSQGGRKRKRFATEAEEETLQSQLIDVLEKNGKMLRDHLEAQNTNFQLDRQQQRDTATNIVAVLDKLADALGRIADKFACEEFYWEEEREWGRPTVKEMEGTGLWPTNHSLFTLVSQLGFSVRHQIQLNSTPLQMVLFVFDTPIPRSSIRAAIMQNHTYS 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01547 408 MobiDBLite consensus disorder prediction 1 37 - -
Spst1g01547 408 Gene3D - 40 108 - -
Spst1g01547 408 ProSiteProfiles Myb-like domain profile. 32 103 IPR001005 -
Spst1g01547 408 Pfam Myb/SANT-like DNA-binding domain 39 126 IPR044822 -
Spst1g01547 408 CDD GT1 38 110 - -
Spst1g01547 408 MobiDBLite consensus disorder prediction 228 263 - -
Spst1g01547 408 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 6 325 - -
Spst1g01547 408 MobiDBLite consensus disorder prediction 228 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01547 Spst-Chr1 19250785 19258329 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01547 39 111 Trihelix Transcription Factor Family AT1G33240 34.247 1.37e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Spst1g01547 Myb_DNA-bind_4 2.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01547 - - gmx:100788594 568.926