Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01545 ATGTCTCAGCCAGAGACAACTGATGAAGATAAGCCACTTGTTCCAGAGACAATTGTTGTAGAAGAATATGGCAAGAGATATGGACTTGGTCTAGCAATTGAGAACAACCTAAAAGTGGATCCAAGAAGGCATGGAAAACTACCACTATCTTCACAAGCATCAAAGGAGAAAGAGAAAGAGGACGCATCACAAGACTTTGATGCTTATGCTTCTTGGTCTTCAGAAACTGACATGTCTGCAATGGTTTCAGCTCTTGCTCAAGTTATGGGAACAACCAATCGGAACCCTTCCATGCCACAATCAACCTCTTCTCCTCTCTCACCTTTCCAGACCAAAGATGAACCTCAACCTCAACCTCCTCTAGATGAAGGGATGAAAAAGAAGGCACACTACAGAGGAGTGAGACAGAGACCATGGGGGAAATGGGCAGCAGAAATCCGTGACCCCAAAAAAGCTGCAAGAGTGTGGCTTGGAACCTTTGAAACGGCAGAGGATGCAGCCCTTGCATATGACAAAGCAGCACTCAAGTTCAAAGGCACCAAAGCCAAGCTCAATTTTCCTGAAAGAGTTCATCATGATGTTTCCTGCATGCAACACCAAGCTTCATCAAACACAAACATTTTTCCCTTCCATGCATCTTCTAACACTGCCTCTGCCACAGGTGCCACTGAGCCTGTTTCTTCTGTTCATGGTGCTGCTCCATCCCCATTTTCCTCACATGATCAACATGGCCACCAAGTTTTTCCAAACCTGCTTCAATATGCACAGATTCTTTCAAGTGATGATGCAGAGTTCCCTTACTACACATCCCATCTTTTCAATCAACAACAGCAGCAGCAGCAACAGCAACCACCCTTCAGCTCTCAATTCTCTACCACTTTTTCTTCAACCTCTTCTCAAGCATCCTACTTCTACAGCCACCACCAACAATTTGATGAACATGGACATGATCACTCAGGCCAGTAG 966 0.4503 MSQPETTDEDKPLVPETIVVEEYGKRYGLGLAIENNLKVDPRRHGKLPLSSQASKEKEKEDASQDFDAYASWSSETDMSAMVSALAQVMGTTNRNPSMPQSTSSPLSPFQTKDEPQPQPPLDEGMKKKAHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAALAYDKAALKFKGTKAKLNFPERVHHDVSCMQHQASSNTNIFPFHASSNTASATGATEPVSSVHGAAPSPFSSHDQHGHQVFPNLLQYAQILSSDDAEFPYYTSHLFNQQQQQQQQQPPFSSQFSTTFSSTSSQASYFYSHHQQFDEHGHDHSGQ 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01545 321 PRINTS Ethylene responsive element binding protein signature 131 142 IPR001471 GO:0003700|GO:0006355
Spst1g01545 321 PRINTS Ethylene responsive element binding protein signature 153 169 IPR001471 GO:0003700|GO:0006355
Spst1g01545 321 Gene3D AP2/ERF domain 129 189 IPR036955 GO:0003700|GO:0006355
Spst1g01545 321 MobiDBLite consensus disorder prediction 91 111 - -
Spst1g01545 321 ProSiteProfiles AP2/ERF domain profile. 130 187 IPR001471 GO:0003700|GO:0006355
Spst1g01545 321 MobiDBLite consensus disorder prediction 274 293 - -
Spst1g01545 321 MobiDBLite consensus disorder prediction 91 126 - -
Spst1g01545 321 MobiDBLite consensus disorder prediction 37 65 - -
Spst1g01545 321 FunFam Ethylene-responsive transcription factor 2 129 188 - -
Spst1g01545 321 PANTHER DNA-BINDING DOMAIN 71 279 IPR044808 GO:0003700|GO:0009873
Spst1g01545 321 Pfam AP2 domain 130 179 IPR001471 GO:0003700|GO:0006355
Spst1g01545 321 MobiDBLite consensus disorder prediction 218 243 - -
Spst1g01545 321 SMART rav1_2 130 193 IPR001471 GO:0003700|GO:0006355
Spst1g01545 321 CDD AP2 129 188 IPR001471 GO:0003700|GO:0006355
Spst1g01545 321 MobiDBLite consensus disorder prediction 35 68 - -
Spst1g01545 321 SUPERFAMILY DNA-binding domain 130 188 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01545 Spst-Chr1 19229894 19234773 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01545 81 273 AP2-EREBP Transcription Factor Family AT5G13330 46.392 4.25e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst1g01545 AP2 4.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01545 - - gmx:100796624 336.265