Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01543 ATGGTTGCCGCCAAGAAAACCAAGAAGACCCATGAGAGCATTAACAACAGGCTCGCTCTTGTCATGAAGAGTGGCAAGTACACCCTTGGTTACAAGACCGTTCTCAAATCCCTAAGGAGTTCCAAAGGGAAAATGATTATCATTGCCAACAATTGCCCTCCATTGAGAAAGTCAGAAATAGAATACTATGCTATGTTGGCAAAGGTTGTAGTTCATCACTACAATGGAAACAATGTGGATTTGGGCACTGCGTGCGGCAAATATTACAGAGTGTGCTGCCTAAGCATTATTGATCCTGGTGATTCAGATATCATCAAGACATTGTCTGGCGAACAATAA 339 0.4248 MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKMIIIANNCPPLRKSEIEYYAMLAKVVVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKTLSGEQ 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01543 112 ProSitePatterns Ribosomal protein L30e signature 1. 24 48 IPR022991 -
Spst1g01543 112 Gene3D - 2 108 IPR029064 -
Spst1g01543 112 ProSitePatterns Ribosomal protein L30e signature 2. 80 100 IPR022991 -
Spst1g01543 112 SUPERFAMILY L30e-like 13 106 IPR029064 -
Spst1g01543 112 Hamap 50S ribosomal protein L30e [rpl30e]. 12 109 IPR000231 GO:0003723|GO:0003735|GO:0022625
Spst1g01543 112 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 13 105 IPR004038 -
Spst1g01543 112 FunFam 60S ribosomal protein L30 2 108 - -
Spst1g01543 112 PANTHER RIBOSOMAL PROTEIN L30 1 109 IPR039109 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01543 Spst-Chr1 19209691 19211159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01543 1 112 Cytoplasmic Ribosomal Protein Gene Family AT1G36240 84.821 2.38e-69 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01543 K02908 - gmx:100806260 222.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01543 1 19209691 19211159 Spst4g00411 4 5010768 5012446 PCT