Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01532 ATGAATTCAGCTGAAGAATCACAAAAGTATAAGGAAATAAAGCAATTGACAGAAGGAATGCAAGAGCATAAGGAAAATAAGCCTCTGGTGTTGTCAAATGAATTTGTTGGTTGGGAATATGAGGAAAATGTTAAGAATATGTGGGAGCTTTTGGGAGATGATCAAGTTTTCATTATTGGCTTATGTGGAATGGGAGGAGTGGGGAAAACATTCCTAGCAACTTATATGGAGAATGAGATAAAAAGAAAGGGAACATTCGGGGATGTCTTTTGGATCAATGTTTCCCAGGATTTTAGCATTCTCAAATTGCAACATAACATTGCAGAAACAATAGGAGTAAAGCTCAATAGAGATGATGAGAGAACTAGAGCAGCAATTTTGACGTCAGAGTTAGAGAAAAGAGGGAAATCAGTATTTATTTTGGATGATGTTTGGAATTATATTGATCTAGAAAAGGTGGGAATTCCTCTTGGATTAAAGGGTAATAAATTGATTATAACAAGTCGTTTGAAACATGTGTGTCAACAGATGGATTGCCTGCCAAATAATCTGATAACAATACACCCTTTGGGTTATCCCGATGATGATGATGATGATGGTGGTGAAGCATGGGAGCTATTTTTGCTTAGACTTGGACACCATGGAACACCTGCTATACTTCCCCCTGAAGTAGAGTATATTGCAAAATCTGTTGTAAAGAATAGTCGTGGTTTACCACTTGCAATCAATGTGATGGCTCGAACCATGAAAGGGCGACAAGACGACATTCATTGGTGGAGACATGCGCTGAATAAACTTGACAAGGTGATGGAAGAGATATTCGCAACACTCAAACACAGCTATGATAATTTAATTGAAAAGGATGTGAAAAAATATTTCTTATATTGTGCATTACTACCTGATATTTACCACAGCGATTATTTTATCAAAAGGATTTTTGAGACTGAATTCTCAAATAGAAAGGGGAGTTTGGAGGACATATTTGATGACGCGAAAGTCATTGTGGATAAACTCGACGACCATTCTTTATTGTTGAGGGATGAAGAGTGTAGACGTATGCATAATCTGGTGAGGAAAATGGCGTGTTACGATAAAATGATGGTAAAACGTCATGAAAAACTGAAAAAAATACCTGACATAGAGGAATGGACAATTGATTTGGAGGCAGTTTCTTTGGCAGGTAACAACATAAAAGAAATCCCAGAGAGCACATCACCTAATTGTCCACACTTGTCCTGGTTGATTTTATCTCACAATTCCATCTGTTATATTCCAGATAGTTTATTCACACACATGAATGCTCTAACAATACTTGACCTATCACGGAATCGTGAATTAAAATGTTTACCAAATTCGTTGTCTAACTTGAGGTCTCTTACTTCTTTAGTGCTCAGTGGATGCTTCAAATTGGAATATATACCACCGCTGGGAGAGCTACAAGCATTGTTAAGATTGGACCTTTCACAATGTTCCATCCTCCAAGTACCACCGGAAGGTTTGGAAAATCTAATAAACTTGAAATGGCTAGATCTGTCCCGTAACTACAAGATGCTAGTACGAGGAAATGTACTAAGCAAATTGATCAGTATGCGAGTTCTCGATCTTCGGTATTGTTCAGGTATAGAAGTAATAGACGTGCAAGGGATGAGTATGCTTGATTGTTTTAGAGCAAGTTTTGTGGACCAGGATAACTACATTCGTTACATGCAAGAAATCCAATGCAGAGATTATGGTCCTAAAACTTATCTTATCCTCATGGGAAAATGTGAGGGTTGGATGCCTTGTTATATGGATCCTATTTATTTAGAATTTAAGGGTCGAAGAGTTTGCTTTGGAGATTGTGAAGAACTTCCCTATTTACTGCCAAGAGACCTTAAGGAATTGAATGTAACTAACAATGATCAATGGGAATGCTTATGTGGCACCCTGTCATGGAATAACCCTCCTTCTCTGAAGAAGATTTACATTAGTGATTGCCGAAGACTGAAGAGCTTGTTATGTTTGTCAAATTCTTGTTCCTTATGCACTAATATCCAAAACCTCCAATCTTTGAGTGTTTATAATTTAGAAGGTTTAACTGCAATCGGCAAAGATGTTGATTTAACACAATCTTTGTCACCGAGGGGCGTGTTCTTTCATCTTAAGAAACTTTACATCAACGATTGCCATAAAATAGAAACGTTGTTGACACCAGGTTTAGTGCCACAGCTTCATAACCTGGAATATATGACTGTTTCGAGTTGTTATTCGATGAAGGAGATATTTGCAGAGCATGATAATGGTGATGGCAATAATTTAAACATTACTCTCCCCAAGTTGATCACTTTTAAACTGTCGACTTTACCACTATTGAAGATTGTGTCTAAAGGAACCTTAGTGTGTAGGTCTAAGAATATATTGGAGATTCGGGGTTGTCCCAAATTAGAAATGTTCCCCAAAATACAAGTCTTTTGTGGTTGA 2460 0.3736 MNSAEESQKYKEIKQLTEGMQEHKENKPLVLSNEFVGWEYEENVKNMWELLGDDQVFIIGLCGMGGVGKTFLATYMENEIKRKGTFGDVFWINVSQDFSILKLQHNIAETIGVKLNRDDERTRAAILTSELEKRGKSVFILDDVWNYIDLEKVGIPLGLKGNKLIITSRLKHVCQQMDCLPNNLITIHPLGYPDDDDDDGGEAWELFLLRLGHHGTPAILPPEVEYIAKSVVKNSRGLPLAINVMARTMKGRQDDIHWWRHALNKLDKVMEEIFATLKHSYDNLIEKDVKKYFLYCALLPDIYHSDYFIKRIFETEFSNRKGSLEDIFDDAKVIVDKLDDHSLLLRDEECRRMHNLVRKMACYDKMMVKRHEKLKKIPDIEEWTIDLEAVSLAGNNIKEIPESTSPNCPHLSWLILSHNSICYIPDSLFTHMNALTILDLSRNRELKCLPNSLSNLRSLTSLVLSGCFKLEYIPPLGELQALLRLDLSQCSILQVPPEGLENLINLKWLDLSRNYKMLVRGNVLSKLISMRVLDLRYCSGIEVIDVQGMSMLDCFRASFVDQDNYIRYMQEIQCRDYGPKTYLILMGKCEGWMPCYMDPIYLEFKGRRVCFGDCEELPYLLPRDLKELNVTNNDQWECLCGTLSWNNPPSLKKIYISDCRRLKSLLCLSNSCSLCTNIQNLQSLSVYNLEGLTAIGKDVDLTQSLSPRGVFFHLKKLYINDCHKIETLLTPGLVPQLHNLEYMTVSSCYSMKEIFAEHDNGDGNNLNITLPKLITFKLSTLPLLKIVSKGTLVCRSKNILEIRGCPKLEMFPKIQVFCG 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01532 819 Gene3D - 22 183 IPR027417 -
Spst1g01532 819 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 8 812 - -
Spst1g01532 819 SMART LRR_typ_2 432 456 IPR003591 -
Spst1g01532 819 SMART LRR_typ_2 408 431 IPR003591 -
Spst1g01532 819 SMART LRR_typ_2 479 502 IPR003591 -
Spst1g01532 819 SUPERFAMILY L domain-like 372 814 - -
Spst1g01532 819 Gene3D Ribonuclease Inhibitor 670 816 IPR032675 -
Spst1g01532 819 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 296 IPR027417 -
Spst1g01532 819 Gene3D Ribonuclease Inhibitor 347 669 IPR032675 -
Spst1g01532 819 FunFam Probable disease resistance protein At1g61300 18 180 - -
Spst1g01532 819 Gene3D - 199 285 IPR042197 -
Spst1g01532 819 Pfam Leucine rich repeat 409 467 IPR001611 GO:0005515
Spst1g01532 819 Pfam Leucine rich repeat 482 538 IPR001611 GO:0005515
Spst1g01532 819 Pfam NB-ARC domain 43 285 IPR002182 GO:0043531
Spst1g01532 819 PRINTS Disease resistance protein signature 58 73 - -
Spst1g01532 819 PRINTS Disease resistance protein signature 235 249 - -
Spst1g01532 819 PRINTS Disease resistance protein signature 131 145 - -
Spst1g01532 819 PRINTS Disease resistance protein signature 477 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01532 Spst-Chr1 19139551 19142010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01532 59 754 WRKY Transcription Factor Family AT5G45050 23.513 2.54e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01532 - - gsj:114397439 855.899