Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01531 ATGGCTTCAACCAATCCTTCTCCAAATGCTTCCCCTGTTGCAGTGCCTCCAGTACTTGGTGATATTTTAACACCATCACCTTCTTCATCTTCTCCAACCAATTCTTCCACCCCTCCATCACCTCCCAATTCTTCCCAGCCTAATCAAACACCCAATTCCCCTGCTCCTTCATCTCCCTCTGACCCTTCAGCTCCACCTCCCTCTCCTCCTCCGGCAGTGCCTGTAACACCTCCTCCTTCCACATCACTCTCTCCTCCGCCATCTTCTCCACCACCACCAGCTCTGCCTCCTCCTTCACCACCAGATTCTCCACCACCATTACCACCAGCATCTCCAACACCACCAGTTGTAACATCTCCCCCCTCACCACCAGCTACCTCCACTGCCCCTCCTCCAGCTGAGACAACACCTTCCCCTCCAATTTTGACCCCACCATCTCCACCAACTGTTTCCCCTCCTCCTCAATTACCTCCCACAACAATTCCACCTCCCTCTCAACCGATTTCATCATCTCCTCCTCCTCCAGCCAATGTTCCAAGGCCACCATCCACTGGTACTCCTCCACAGAAAGAAAGTCCTCCAAAAACTACTCCTTCGCATGCGTCCCCTCCATCAGTTTCTCAATCTCCTCCTAAGCCTCCTTCCTCTGATGTTCCTCCTCCATCCTTATTGCCATCGACTCCTCCTTCAGTCCCTTCAGGATCTCCACCTCCAGCTTCTTTGCCTGACCCCCCAACCAATGAAACAGCCGCTGGGGGTCCACCGGTACCGCTACCCACTCTTCCAACTGAGAAACCCACTGCTAGACCAACTAATGATGCTACTAACAATATATCTACAATACCTTCACGTTCAGGAGGGTTAAGTAGTGGAGGATCCGTGGCTATTGGAATTGTAGTTGGTTTTATTGTCCTTAGCCTTCTTGTTATGGCCGTGTGGTTTGTAAAGAAGAAAAAGAAGAAGGAAAAAGGATCAGGAGGCGGTTATGCTGCTCCTTCTCCATTTACTTCGTCCCACAATTCAGGTACCTTATTCTTGAGGCCACAGTCTCCAGCCAACTTTGTAGCAGGTAGTGGCTCTGGGAGTGATTTTGTGTATTCTCCATCAGAGCCAGGCGGAGTAAGTAGTTCAAGATCATGGTTCACATATGAAGAACTTGTTCAAGCTACAAATGGATTTTCGGCACAAAATTTGTTGGGAGAGGGTGGATTTGGTTGTGTCTATAAAGGTTTGCTTGTAGATGGAAGAGAAGTAGCTGTGAAGCAGCTTAAAGTTGGAGGTGGGCAAGGGGAACGTGAATTCAGGGCAGAAGTTGAGATTATTAGCCGCGTACATCATCGACATCTGGTTTCCTTGGTTGGTTACTGTATTTCTGAGCATCAGAGATTGCTTGTATATGACTATGTTCCCAACAACACTCTTCATTACCATCTCCATGCTGAAAATAGACCAGTTCTGGATTGGTCTACCAGAATCAAGGTTGCTGCTGGTGCAGCTCGTGGAATAGCTTACCTGCATGAAGACTGCCATCCACGCATTATTCATCGAGATATAAAGTCATCAAACATCCTTCTTGATCTCAACTACGAAGCTCAAGTTTCGGACTTTGGGCTTGCAAAATTGGCATTAGATTCAAATACACATGTGACAACACGTGTAATGGGAACCTTTGGGTACATGGCACCAGAATATGCAACAAGTGGGAAACTAACGGAAAAGTCTGATGTATATTCCTTCGGCGTTGTGCTTTTGGAGTTAATTACAGGTCGGAAGCCTGTAGATGCATCTCAACCAATTGGTGATGAGAGCCTCGTTGAATGGGCTCGGCCTTTGTTGACTGAAGCCCTTGATAAGGAGGACTTTGAAATCTTGGTGGATCCAAGACTGGGAAAGAACTATGATAGAAATGAAATGTTCCGGATGATCGAGGCCGCTGCAGCCTGTGTACGCCACTCATCGGTGAAGAGGCCACGCATGAGTCAGGTGGTGAGAGCTTTAGATTCCTTAGACGAGATTACGGATCTCAATAATGGAATGAAACCTGGGCAGAGTTCGGTGTTTGATTCTGCACAGCAATCTGCTCAAATCAGAATGTTTAGGAGGATGGCTTTTGGAAGCCAAGATAGTTCAAGTTTCTTCAATGAGTCTCAGAGTAGCTGGAGGAGTAGAGATCAGGACTCAACAACCATATTTTCCCAAAACAAAACTGGGCCTTGGAACGTTTGA 2226 0.4748 MASTNPSPNASPVAVPPVLGDILTPSPSSSSPTNSSTPPSPPNSSQPNQTPNSPAPSSPSDPSAPPPSPPPAVPVTPPPSTSLSPPPSSPPPPALPPPSPPDSPPPLPPASPTPPVVTSPPSPPATSTAPPPAETTPSPPILTPPSPPTVSPPPQLPPTTIPPPSQPISSSPPPPANVPRPPSTGTPPQKESPPKTTPSHASPPSVSQSPPKPPSSDVPPPSLLPSTPPSVPSGSPPPASLPDPPTNETAAGGPPVPLPTLPTEKPTARPTNDATNNISTIPSRSGGLSSGGSVAIGIVVGFIVLSLLVMAVWFVKKKKKKEKGSGGGYAAPSPFTSSHNSGTLFLRPQSPANFVAGSGSGSDFVYSPSEPGGVSSSRSWFTYEELVQATNGFSAQNLLGEGGFGCVYKGLLVDGREVAVKQLKVGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDYVPNNTLHYHLHAENRPVLDWSTRIKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDLNYEAQVSDFGLAKLALDSNTHVTTRVMGTFGYMAPEYATSGKLTEKSDVYSFGVVLLELITGRKPVDASQPIGDESLVEWARPLLTEALDKEDFEILVDPRLGKNYDRNEMFRMIEAAAACVRHSSVKRPRMSQVVRALDSLDEITDLNNGMKPGQSSVFDSAQQSAQIRMFRRMAFGSQDSSSFFNESQSSWRSRDQDSTTIFSQNKTGPWNV 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01531 741 Gene3D Phosphorylase Kinase; domain 1 370 468 - -
Spst1g01531 741 ProSitePatterns Serine/Threonine protein kinases active-site signature. 513 525 IPR008271 GO:0004672|GO:0006468
Spst1g01531 741 MobiDBLite consensus disorder prediction 1 289 - -
Spst1g01531 741 SUPERFAMILY Protein kinase-like (PK-like) 371 666 IPR011009 -
Spst1g01531 741 ProSitePatterns Protein kinases ATP-binding region signature. 399 421 IPR017441 GO:0005524
Spst1g01531 741 CDD STKc_IRAK 399 669 - -
Spst1g01531 741 MobiDBLite consensus disorder prediction 265 289 - -
Spst1g01531 741 ProSiteProfiles Protein kinase domain profile. 393 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01531 741 MobiDBLite consensus disorder prediction 32 264 - -
Spst1g01531 741 SMART serkin_6 393 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01531 741 MobiDBLite consensus disorder prediction 715 741 - -
Spst1g01531 741 Pfam Protein tyrosine and serine/threonine kinase 396 666 IPR001245 GO:0004672|GO:0006468
Spst1g01531 741 FunFam Proline-rich receptor-like protein kinase PERK8 366 468 - -
Spst1g01531 741 FunFam proline-rich receptor-like protein kinase PERK8 469 681 - -
Spst1g01531 741 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 302 711 IPR047117 -
Spst1g01531 741 Gene3D Transferase(Phosphotransferase) domain 1 469 686 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01531 Spst-Chr1 19131567 19136776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01531 264 725 Trihelix Transcription Factor Family AT5G38560 70.975 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Spst1g01531 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01531 - - gmx:100784873 914.835