Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01506 ATGTCCGACCTTTTGGACACCACTAACTTTCTGACACGTGTCGCACAGAGATTCTCCCGCTCTCTCGACGCCACCAAAAACAGCAACAACAAACCCCTTTGGGCTTACACACAAACACAACACCACTTCCGAGGTTTTCAGTTTCTTTATTTTTTTTTTCTTTCCCAATCTCACCGAAACTGCAAACGCACACTCAACTCATTCACTCTGACAAAACTACTAACTCCCCGAATGTTGGAGGGAGAAGCTGCTGGCACGTGGGCACGCACGTGCGACACGTGCCGCTCCGCCGCCTCCACCGTCTTCTGCCGCGCCCATAACGCCTATCTCTGCGCTTCCTGCGACTCGCGCGTGCACCAGGCGTCCTCTTCCTGGCACGAGCGCGTGTGGGTCTGCGAGGCCTGCGAGCGCGCCCCGGCGGCGTTCCTCTGCAAGGCTGACGCAGCATCCCTCTGCTCCTCATGCGACGCGGACATCCACTCGGCCAACCCCCTCGCCAGCCGTCACCACCGTGTCCCCATCCTCCCCATCGCCCCCGGCCACCACTCTCACGTCGACATCGACGTCGCCGACGACGACGATGCTGCTGACGTTGATGACGAAGACGAAACCGCTTCCTGGCTCTTGCTGAACCCAGTCAAAACTGGCACTGTCCCTAACAGCAACAATAATGGGTTCTTGTACAGTGGTGAAGTTGATGAGTATTTGGACCTTGTTGATAACTGTAACTCTTGTGGTGACACCAACCACTTCGCTGCAACTACCACTACTGCCACTACTACTGATCACTACACTCAGCACCATCACTTTGATGGTGTTTCTCAGAAGAGTTATGCTGGGGACAGTGTGGTTCCAGTTCAGCAGCACCAGCATTTTCAGCTTGGCTTAGAGTTTGAGAATTCTAAAGCTGCCTTCAGTTACAATGGTTCTATTAGTCAAAGTGTTTCAGTTTCATCAATGGATATTGGTGTTGTACCTGAATCACCGATGAGGGATGTCTCAATTTCCCATACAAGACCCCCCAAAGGGACGATTGACCTATTTTCTGGACCTCCCATTCAGATGCCTTCCCACTTTTCTCCAATGGACAGGGAGGCCAGAGTCCTAAGGTACAGAGAGAAAAAGAAGACAAGAAAATTTGAGAAGACAATCAGGTATGCCTCAAGGAAGGCCTATGCAGAAACTAGACCCCGTATAAAAGGTCGATTCGCCAAGAGAACAGATGTAGAAGCTGAAGTAGATCAAATGTTCTCCACAACACTAATTACAGAAGTTGGATATGGCATTGTTCCCTCTTTCTGA 1302 0.5123 MSDLLDTTNFLTRVAQRFSRSLDATKNSNNKPLWAYTQTQHHFRGFQFLYFFFLSQSHRNCKRTLNSFTLTKLLTPRMLEGEAAGTWARTCDTCRSAASTVFCRAHNAYLCASCDSRVHQASSSWHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHHRVPILPIAPGHHSHVDIDVADDDDAADVDDEDETASWLLLNPVKTGTVPNSNNNGFLYSGEVDEYLDLVDNCNSCGDTNHFAATTTTATTTDHYTQHHHFDGVSQKSYAGDSVVPVQQHQHFQLGLEFENSKAAFSYNGSISQSVSVSSMDIGVVPESPMRDVSISHTRPPKGTIDLFSGPPIQMPSHFSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLITEVGYGIVPSF 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01506 433 ProSiteProfiles Zinc finger B-box type profile. 86 131 IPR000315 GO:0008270
Spst1g01506 433 CDD Bbox1_BBX-like 131 174 - -
Spst1g01506 433 ProSiteProfiles CCT domain profile. 364 406 IPR010402 GO:0005515
Spst1g01506 433 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 91 420 IPR045281 GO:0009909
Spst1g01506 433 Pfam CCT motif 364 406 IPR010402 GO:0005515
Spst1g01506 433 SMART bboxneu5 127 174 IPR000315 GO:0008270
Spst1g01506 433 SMART bboxneu5 86 124 IPR000315 GO:0008270
Spst1g01506 433 Pfam B-box zinc finger 129 174 IPR000315 GO:0008270
Spst1g01506 433 CDD Bbox1_BBX-like 91 131 - -
Spst1g01506 433 ProSiteProfiles Zinc finger B-box type profile. 127 174 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01506 Spst-Chr1 18758819 18761305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01506 80 433 C2C2-CO-like Transcription Factor Family AT3G02380 53.930 5.54e-125 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Spst1g01506 zf-B_box 5.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01506 K12135 - gmx:100301886 572.392