Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01486 ATGGTTGATCAAGGTGATTTAGTTGTCATCTGTGTCTCGATTGGAGTGGCCCTTGGGGTTTTGATAGCTTGCTTAGTATATTTTGGCATAAGGTGGTACAAAAAGCGAGCACATCTTAGCCGATCTGCGAATGAGCCTAGTTTAACAACTATACCTATACGAACAAATGGCTTAGGAACAAGCACAGACTTCAGTGCTTCCCTCACCAGTTCCATAGCCACTTATAGGTCACCGAATCCTCAAAAAAACCCGCATCCAGCTCGGTGGAATCATCAGACTAAAGATGGGTTTGCTTCTGGATCAGGCATTCTTAAATACTCATACAAGGAAATTCAAAAGGCCACACAAAATTTCACAAATACTTTGGGAGAAGGATCATTTGGCATTGTTTATAAGGCCATGATGCCTACTGGAGAAGTGGTAGCTGTGAAGATACTTGCACCCAATTCCAAACAAGGGGAGAAAGAATTTCTAACGGAGGTGCTTCTGCTAGGAAGACTTCATCATCGGAATCTTGTAAATTTGTTGGGGTACTGCGTAGATAAGGGACAGCTTATGCTTGTTTACGAGTTCATGAGTAATGGAAGTTTAGAAAACCTTTTATACGGTGAAGAAAAAGAATTGAGTTGGGATGAAAGGCTGCAAATTGCTGTTGATATTTCTCACGGAATAGAATACCTTCACGAAGGGGCAGTACCACCAGTTGTACATCGTGATTTGAAATCTGCTAATATTCTGCTAGATCACTCAATGAGAGCTAAGGTTTCTGATTTTGGCCTCTCAAGGGAAGAGATCTTTGATGGCCGTAATTCTGGCCTTAAAGGAACGTACGGGTACATGGATCCAGCATACATTTCCTCAAGCAAGTTCACTGTGAAGAGTGACATTTACAGTTTCGGTATAATAATTTTTGAGCTCATCACTGCTATCCACCCACATCAAAATTTGATGGAATATATCAACCTTGCTGCAATGGATTATGATGGTGTGGATGGGATTCTTGACAAGCAACTTGTGGGAACATGCAACGTTGAAGAAGTGCGACAGCTTGCTAAAATTGCACACAAATGTTTGCACAAATCACCTAAGAAACGCCCCTCTATAGGTGAGGTTTCGCAGGTTATATTGGGGATTAAGCAAAGGCGGCTCATGAAAGAAGACACCATGTCATTTGCAAGCACCAACTTCTCCCGCAGTGTGAGTCAAATAGAGGAGCAACAGGTTGAATTAAGTAGAATAATCACCGTGAACCACAGGGAAATGGGGTGA 1269 0.4208 MVDQGDLVVICVSIGVALGVLIACLVYFGIRWYKKRAHLSRSANEPSLTTIPIRTNGLGTSTDFSASLTSSIATYRSPNPQKNPHPARWNHQTKDGFASGSGILKYSYKEIQKATQNFTNTLGEGSFGIVYKAMMPTGEVVAVKILAPNSKQGEKEFLTEVLLLGRLHHRNLVNLLGYCVDKGQLMLVYEFMSNGSLENLLYGEEKELSWDERLQIAVDISHGIEYLHEGAVPPVVHRDLKSANILLDHSMRAKVSDFGLSREEIFDGRNSGLKGTYGYMDPAYISSSKFTVKSDIYSFGIIIFELITAIHPHQNLMEYINLAAMDYDGVDGILDKQLVGTCNVEEVRQLAKIAHKCLHKSPKKRPSIGEVSQVILGIKQRRLMKEDTMSFASTNFSRSVSQIEEQQVELSRIITVNHREMG 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01486 422 Gene3D Transferase(Phosphotransferase) domain 1 192 400 - -
Spst1g01486 422 SMART serkin_6 116 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01486 422 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Spst1g01486 422 ProSiteProfiles Protein kinase domain profile. 116 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01486 422 Gene3D Phosphorylase Kinase; domain 1 85 191 - -
Spst1g01486 422 FunFam serine/threonine-protein kinase PBS1-like 87 191 - -
Spst1g01486 422 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 8 384 - -
Spst1g01486 422 CDD STKc_IRAK 122 378 - -
Spst1g01486 422 Pfam Protein tyrosine and serine/threonine kinase 118 373 IPR001245 GO:0004672|GO:0006468
Spst1g01486 422 SUPERFAMILY Protein kinase-like (PK-like) 93 373 IPR011009 -
Spst1g01486 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Spst1g01486 422 FunFam Calcium/calmodulin-regulated receptor-like kinase 2 192 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01486 Spst-Chr1 18533075 18537466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01486 111 371 Receptor kinase-like Gene Family AT1G67720 45.788 2.70e-69 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Spst1g01486 PK_Tyr_Ser-Thr 5.5e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01486 - - gmx:100794239 765.377