Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01483 ATGGCTAGGTCTGCAAAAGGGCATCAAGATGAATTGGAGGACGATGAAGAAGAAGAATTCCTAACTGCAAACACCTCTTCCTCTCTCAACAAAGTGAAGGTGGACGAGCCCAGCACGGGGAAGAGGGTGAATACGCATCGTTCGAAGCATTCGGAGACTGAGCAACGTAGAAGGAGCAAGATTAACGAAAGGTTTCAAGTTCTAAGAGATCTCATACCTCAAAATGATCAAAAGAGAGATAAGGCATCCTTCTTGTTGGAGGTTATCGAGTATATTCAGTTCCTACAGGAAAAATTACAAATTTATGAGCAGTCTTATGAAGGATGGAGTCAGGAGCCAACGAAACTAATTCCATGGAGAAATCATCATGGGCATGCAGAAAATACTACAGATCCTTCTCAAGCTATACAAAATGGGTCTATTGATGAGAAAAATAACAATTCCTCTCCATTTTATCCCAAAAATGTACCGAACCCCATGGAATCTGACTTCTCCGTGATGACTGCCCAGAAGGGCCACACCCCTGGTTCATCTACAGAAGCAGTTCCCCTGACCATGCAAATGCGGTTGGACATGTTTGATCCAGTTGCAACCCAGCATCTTCAGGAATCTGTATCTAACGTTGACATGCCTTCCCATATCCAGCCACAAGTGTGGCTTGATAAAGCAAACAAGGGCAACTATATTCTTCCTCATGATAATACAATGAAGGAACAGGAGGAGCTGGTGATTGAATCTGGATCAGATAGCATTTCTAGTGCCTATTCTCAGGGAATTTTAGATACTCTAACACAAACGCTGCAGTGTTCGGGCGTAGATATGTCCCAGACAAATCTCTCGGTGCAAATTGATGTTGGCAGACGAGCAAATACTGGCTTGATCCCCTCTGCATACAGTTCAAAGGGTCATGAAAACCAATTTGTGAGCAACCCAGCCATATCACGATCCGGAGTTGATTACTGCAATATTGAATCTGAACAAAGTTCAAAGAGGCTCAGACAAGAAGCAAACTAG 1014 0.4339 MARSAKGHQDELEDDEEEEFLTANTSSSLNKVKVDEPSTGKRVNTHRSKHSETEQRRRSKINERFQVLRDLIPQNDQKRDKASFLLEVIEYIQFLQEKLQIYEQSYEGWSQEPTKLIPWRNHHGHAENTTDPSQAIQNGSIDEKNNNSSPFYPKNVPNPMESDFSVMTAQKGHTPGSSTEAVPLTMQMRLDMFDPVATQHLQESVSNVDMPSHIQPQVWLDKANKGNYILPHDNTMKEQEELVIESGSDSISSAYSQGILDTLTQTLQCSGVDMSQTNLSVQIDVGRRANTGLIPSAYSSKGHENQFVSNPAISRSGVDYCNIESEQSSKRLRQEAN 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01483 337 SMART finulus 51 101 IPR011598 GO:0046983
Spst1g01483 337 MobiDBLite consensus disorder prediction 1 61 - -
Spst1g01483 337 Coils Coil 92 112 - -
Spst1g01483 337 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 334 IPR044295 GO:0003700|GO:0006351|GO:0046983
Spst1g01483 337 MobiDBLite consensus disorder prediction 121 162 - -
Spst1g01483 337 Pfam Helix-loop-helix DNA-binding domain 47 96 IPR011598 GO:0046983
Spst1g01483 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 123 IPR036638 GO:0046983
Spst1g01483 337 Gene3D - 43 116 IPR036638 GO:0046983
Spst1g01483 337 MobiDBLite consensus disorder prediction 35 61 - -
Spst1g01483 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 95 IPR011598 GO:0046983
Spst1g01483 337 FunFam BHLH domain class transcription factor 43 115 - -
Spst1g01483 337 CDD bHLH_AtBIM_like 44 120 - -
Spst1g01483 337 MobiDBLite consensus disorder prediction 128 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01483 Spst-Chr1 18511023 18515238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01483 3 301 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 42.071 3.23e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst1g01483 HLH 1.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01483 - - gmx:100791730 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01483 1 18511023 18515238 Spst1g01483 1 18511023 18515238 ECH