Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst1g01474 | ATGGGTTCAGTTTGTTGCTGTTTGAATGTTGATGATATTGAAGATTATATGAATCCAAATAGTCCTGTATACAGGAACTGTGCGTCTCTCAGTTGCTTCACACAGTACTTTTTAACTGTGTATGCATCAATATTCCGTAGAGGGGAAGTGCATGCGATTCCATCACCTATACAGGGTTCAGCATCTATGACTTCTGCCGCTTCACTTGATAATGCTCTATCTGACATGTACCGTTCTCCTCCAAGGCCCTTGCCTTATGATGCAGACCCCAGGTTTTTCCGTTCACAGCGTGATGGACTAGTGTCAAGACGAGAGAAGGGTTCAAGTCATTTGAATGAAGAGTCAGAACTTCTCCGAGGTGATTTAGATGCTGACTCGGAAACTTTAAATTCGGGTGGTAAATGGAATGATGATACCAGTGAACATGGATCCAAGGAATACCGTTCTAAGTCCTCTGTGCGACTTTCATCAGCAAAATTTACAACTGGAGCTGGGGTTGTCTATTCATCCTCAGAAGAGGAGGATGTCTGTCCGACATGTCTTGAAGAATACACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAAAGAAGTGACAACTGTCCTGTTTGTGGGAAGGTGATGGTATTCGATGAAACGACTTAA | 684 | 0.4254 | MGSVCCCLNVDDIEDYMNPNSPVYRNCASLSCFTQYFLTVYASIFRRGEVHAIPSPIQGSASMTSAASLDNALSDMYRSPPRPLPYDADPRFFRSQRDGLVSRREKGSSHLNEESELLRGDLDADSETLNSGGKWNDDTSEHGSKEYRSKSSVRLSSAKFTTGAGVVYSSSEEEDVCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMVFDETT | 227 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst1g01474 | 227 | CDD | RING-H2_AIRP1-like | 173 | 221 | - | - | |
Spst1g01474 | 227 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 153 | 224 | IPR013083 | - | |
Spst1g01474 | 227 | ProSiteProfiles | Zinc finger RING-type profile. | 177 | 217 | IPR001841 | - | |
Spst1g01474 | 227 | Pfam | RING-H2 zinc finger domain | 171 | 217 | IPR024766 | GO:0008270 | |
Spst1g01474 | 227 | SMART | ring_2 | 177 | 217 | IPR001841 | - | |
Spst1g01474 | 227 | SUPERFAMILY | RING/U-box | 172 | 224 | - | - | |
Spst1g01474 | 227 | FunFam | E3 ubiquitin-protein ligase At3g02290-like | 154 | 224 | - | - | |
Spst1g01474 | 227 | MobiDBLite | consensus disorder prediction | 99 | 123 | - | - | |
Spst1g01474 | 227 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 60 | 225 | - | - | |
Spst1g01474 | 227 | MobiDBLite | consensus disorder prediction | 99 | 149 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst1g01474 | Spst-Chr1 | 18415100 | 18417366 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst1g01474 | 1 | 225 | C3H Transcription Factor Family | AT5G38895 | 56.195 | 5.13e-90 | 266 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst1g01474 | - | - | gmx:100788192 | 428.713 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst1g01474 | 1 | 18415100 | 18417366 | Spst1g01474 | 1 | 18415100 | 18417366 | ECH |