Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01474 ATGGGTTCAGTTTGTTGCTGTTTGAATGTTGATGATATTGAAGATTATATGAATCCAAATAGTCCTGTATACAGGAACTGTGCGTCTCTCAGTTGCTTCACACAGTACTTTTTAACTGTGTATGCATCAATATTCCGTAGAGGGGAAGTGCATGCGATTCCATCACCTATACAGGGTTCAGCATCTATGACTTCTGCCGCTTCACTTGATAATGCTCTATCTGACATGTACCGTTCTCCTCCAAGGCCCTTGCCTTATGATGCAGACCCCAGGTTTTTCCGTTCACAGCGTGATGGACTAGTGTCAAGACGAGAGAAGGGTTCAAGTCATTTGAATGAAGAGTCAGAACTTCTCCGAGGTGATTTAGATGCTGACTCGGAAACTTTAAATTCGGGTGGTAAATGGAATGATGATACCAGTGAACATGGATCCAAGGAATACCGTTCTAAGTCCTCTGTGCGACTTTCATCAGCAAAATTTACAACTGGAGCTGGGGTTGTCTATTCATCCTCAGAAGAGGAGGATGTCTGTCCGACATGTCTTGAAGAATACACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAAAGAAGTGACAACTGTCCTGTTTGTGGGAAGGTGATGGTATTCGATGAAACGACTTAA 684 0.4254 MGSVCCCLNVDDIEDYMNPNSPVYRNCASLSCFTQYFLTVYASIFRRGEVHAIPSPIQGSASMTSAASLDNALSDMYRSPPRPLPYDADPRFFRSQRDGLVSRREKGSSHLNEESELLRGDLDADSETLNSGGKWNDDTSEHGSKEYRSKSSVRLSSAKFTTGAGVVYSSSEEEDVCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMVFDETT 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01474 227 CDD RING-H2_AIRP1-like 173 221 - -
Spst1g01474 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 224 IPR013083 -
Spst1g01474 227 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Spst1g01474 227 Pfam RING-H2 zinc finger domain 171 217 IPR024766 GO:0008270
Spst1g01474 227 SMART ring_2 177 217 IPR001841 -
Spst1g01474 227 SUPERFAMILY RING/U-box 172 224 - -
Spst1g01474 227 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 224 - -
Spst1g01474 227 MobiDBLite consensus disorder prediction 99 123 - -
Spst1g01474 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 60 225 - -
Spst1g01474 227 MobiDBLite consensus disorder prediction 99 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01474 Spst-Chr1 18415100 18417366 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01474 1 225 C3H Transcription Factor Family AT5G38895 56.195 5.13e-90 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01474 - - gmx:100788192 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01474 1 18415100 18417366 Spst1g01474 1 18415100 18417366 ECH