Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01469 ATGGGAAGGGGTAGGGTTCAGCTCAAGCGGATCGAGAACAAAACAAGCCAGCAAGTCACGTTTTCCAAGCGGAGAACGGGACTTCTCAAGAAGGCGCACGAAATCTCTGTTCTTTGTGATGCTCAAGTCGCTTTGATTATGTTCTCTACCAAAGGCAAACTTTTTGAGTATTCCTCTGAACGCAGGAATGAGTCATCAGAACTAGTGAAAGAAAAAACAGAACAAGTCTCGAAGAACATGGAAGACGTGTTGGAACGTTACGAGAGATATGCCCATACAACACTTACTGGACCTAACAATGAATCGCAGGGTAATTGGTCTTTCGAATATATCAAGCTCACAGCTAAAGTTGAAGTCTTGGAGAGGAACGTAAGGAATTTCATGGGAAATGAGCTGGATCCCTTGAGTTTGAAAGAGCTTCAGAATTTGGAGCAGCAGCTTGACACATCTCTGAAGCGCATTCGGACAAGAAAGAATCAAGTTATGAATCAATCCATCTCAGAACTGCATAAAAGGGCAAGGACATTACAAGAGCAAAACAGCAAGCTAACAAAGATGAAGGAAAAGGGAAAGACTTTGAATGAAAGTCCACAGAGCGTCCCGGAAACTCTTGGCCAAAATTCATCCAACCTCAACTTATCTTCTCCACAGCTATTTCCACCACAAAGACTTGTTCCTTCTTTAACTCTCAGCGGGACATTGCAAGGAAGAGGAATGGTGGATGAAACAGGTGAAGCTCAGAGAGTTCCAACAGGAAATTCTCTGATCCCACCATGGATGCTGCGAGTCTGA 792 0.4381 MGRGRVQLKRIENKTSQQVTFSKRRTGLLKKAHEISVLCDAQVALIMFSTKGKLFEYSSERRNESSELVKEKTEQVSKNMEDVLERYERYAHTTLTGPNNESQGNWSFEYIKLTAKVEVLERNVRNFMGNELDPLSLKELQNLEQQLDTSLKRIRTRKNQVMNQSISELHKRARTLQEQNSKLTKMKEKGKTLNESPQSVPETLGQNSSNLNLSSPQLFPPQRLVPSLTLSGTLQGRGMVDETGEAQRVPTGNSLIPPWMLRV 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01469 263 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst1g01469 263 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst1g01469 263 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst1g01469 263 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 192 - -
Spst1g01469 263 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Spst1g01469 263 Pfam K-box region 101 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst1g01469 263 SUPERFAMILY SRF-like 2 69 IPR036879 GO:0003677|GO:0046983
Spst1g01469 263 CDD MADS_MEF2_like 2 92 IPR033896 GO:0000977|GO:0045944
Spst1g01469 263 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Spst1g01469 263 MobiDBLite consensus disorder prediction 184 220 - -
Spst1g01469 263 MobiDBLite consensus disorder prediction 193 220 - -
Spst1g01469 263 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Spst1g01469 263 ProSiteProfiles K-box domain profile. 103 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst1g01469 263 Coils Coil 70 90 - -
Spst1g01469 263 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst1g01469 263 Coils Coil 137 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01469 Spst-Chr1 18381993 18389649 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01469 1 235 MADS-box Gene Family AT1G26310 51.220 1.32e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Spst1g01469 K-box 2.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01469 K09264 - gmx:100786580 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01469 1 18381993 18389649 Spst1g01469 1 18381993 18389649 ECH
Spst4g00318 4 3689266 3692871 Spst1g01469 1 18381993 18389649 PCT
Spst1g01469 1 18381993 18389649 Spst4g00319 4 3693269 3698900 PCT