Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01466 ATGGTCGCTATGATGGGTTCTCTAGCACCAAACAAAGGGTGGAGGAAAGGCCCTTGGACTGGTGAGGAGGATAAGTTGCTAAGTGAATATGTTAGCTTGCGTGGGGAAGGTCGGTGGAGTTCAGTGGCAAACTTTACAGGATTAAATAGGAGCGGCAAAAGCTGCAGGTTAAGATGGGTGAATTATTTGAAACCTGGCCTCAAGAAAGGTCAATTAACACCTCTGGAAGAAGGAACCATTATGGAGCTACATGCACTTTTGGGTAACAAGTGGTCTACGATAGCAAAATACTTGCCAGGTAGAACAGATAACGAGATCAAGAACTACTGGAGAACCCACTTCGGGAAGAGGGAGAAATCCAAACACAAAAAGCCACAAAGGCGACAAAAGGAACAACAACCTAATAAGCCGTGTGATTTCAAAACCATCATGTGTCCCAAGGAAACCATAAACGAAGCAAAATCCTTCGAGACACAAAATAATAAGCAACAAGAAATTGGTTTCATGTACCCAACAATAGATAACCAATATAATACGGTTCCTTCCACTGAGGGATTCTCATCCATGTGGCTAGACACTCCAGTGGATGATGGCTTATGGTTTGGTTTTTGGGACTTTGATGAATCACAGAGTTTTGGAGATTATCTTAACCAGTTTAGCAAATGTGGCATGCCAAATGAAGCCACATTTGCTGTTGGAGGGGATTCCACGCAAAATCATGATAAAACTTCTTGTTTTGATGATGCATCGTTTGCATGA 759 0.4242 MVAMMGSLAPNKGWRKGPWTGEEDKLLSEYVSLRGEGRWSSVANFTGLNRSGKSCRLRWVNYLKPGLKKGQLTPLEEGTIMELHALLGNKWSTIAKYLPGRTDNEIKNYWRTHFGKREKSKHKKPQRRQKEQQPNKPCDFKTIMCPKETINEAKSFETQNNKQQEIGFMYPTIDNQYNTVPSTEGFSSMWLDTPVDDGLWFGFWDFDESQSFGDYLNQFSKCGMPNEATFAVGGDSTQNHDKTSCFDDASFA 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01466 252 SMART sant 68 116 IPR001005 -
Spst1g01466 252 SMART sant 15 65 IPR001005 -
Spst1g01466 252 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 14 163 IPR044676 GO:0003700|GO:0006355|GO:0043565
Spst1g01466 252 Gene3D - 16 68 - -
Spst1g01466 252 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Spst1g01466 252 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Spst1g01466 252 CDD SANT 73 114 IPR001005 -
Spst1g01466 252 Gene3D - 71 145 - -
Spst1g01466 252 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Spst1g01466 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 67 IPR017930 -
Spst1g01466 252 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Spst1g01466 252 FunFam Myb transcription factor 16 68 - -
Spst1g01466 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 118 IPR017930 -
Spst1g01466 252 CDD SANT 18 63 IPR001005 -
Spst1g01466 252 MobiDBLite consensus disorder prediction 116 138 - -
Spst1g01466 252 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01466 Spst-Chr1 18354396 18355409 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01466 13 213 MYB Transcription Factor Family AT3G30210 48.858 9.36e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst1g01466 Myb_DNA-binding 9.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01466 K09422 - gmx:100785540 360.918