Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01463 ATGTTCCTCAATTGTTTGGGCATGTGCTGTTCCAAGCTCACAACTAATACAAATTCATCTCGGAGACAGTTTCCAACAGGATTCTGCGACCACCAAAATGAGAAGATTCTTGTATATGAGTACATGTCCAATGGATCTCTAGATAAACACCTTCCAGGTGGGAAACTGTCATGGAAGAAAAGGGTAGAGATATGCATAGGCGTAGCACGTGGACTACACTACCTTCACACAGGAGCCAAGCGCTCCATCTTTAACTGTATCCTCAGAGCCAGTACCATTCTCTTGGATGGCAATATGGAGCCAAAACTCGCAGCTTTCGGTCTCAGCGTACAGGGACCACGATTCAATCCAAAGCCTCAGCCGAAACAGATTAATGTAGATCATATTATAGGTGTTGTTGGCTACATGCCTCTGGAGTACGTGATGGATGGCACCGTCACAGATAAATGGGATGTTTTCTCATTTGGTTTGATTCTACTACTAGTTGTGTGTGGAATGAATTATTTAAGAATCGTAACAGAAAGGGGATTTCTGGAGAAGCCAATTGAGGAAATGATTGATCCGGACATCAAAGGAAAGATTGCATCACAGTGTTGGGAAGTCTTTGTAGGTATCATGGTCAGATGTTTGGAGTATGAACAAAATGAGCGACCAGCAATGGGCGAAGATTCTGCAACCACGGAAACGAGAAGATTCTTGTGTATTAGTACATGTCCAATGGATCTACTGTCATGGAAGAAAAGACTACAATACCTTCATGCAGGACCCAACCGCACCGTCATTCACAATATTATTGGCTACATAGCTGTAGAGAATTACAGGGACGGTATCGTCACAGATAAATGTGATGTTCACTCATTTGGTGTGGTTTTACTACTAGTTCTGCTTGGAAGGGAATCTTTTGTAGATGTAGTAGACCTTCTGGAGGAACCTGCTGAGGAGAATATTGGTCCAAATATCAAAGGAAAGATTGCACCACAGTGTTGGCAAGTATCTACAGAGACCAACACTGGTAAAATAGAAGTTGAAATTGAGCATGGTATGTCCTTGTAG 1053 0.4255 MFLNCLGMCCSKLTTNTNSSRRQFPTGFCDHQNEKILVYEYMSNGSLDKHLPGGKLSWKKRVEICIGVARGLHYLHTGAKRSIFNCILRASTILLDGNMEPKLAAFGLSVQGPRFNPKPQPKQINVDHIIGVVGYMPLEYVMDGTVTDKWDVFSFGLILLLVVCGMNYLRIVTERGFLEKPIEEMIDPDIKGKIASQCWEVFVGIMVRCLEYEQNERPAMGEDSATTETRRFLCISTCPMDLLSWKKRLQYLHAGPNRTVIHNIIGYIAVENYRDGIVTDKCDVHSFGVVLLLVLLGRESFVDVVDLLEEPAEENIGPNIKGKIAPQCWQVSTETNTGKIEVEIEHGMSL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01463 350 PANTHER OS07G0166700 PROTEIN 260 335 IPR045272 GO:0004714|GO:0006468
Spst1g01463 350 Gene3D Transferase(Phosphotransferase) domain 1 242 337 - -
Spst1g01463 350 ProSiteProfiles Protein kinase domain profile. 1 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01463 350 SUPERFAMILY Protein kinase-like (PK-like) 257 303 IPR011009 -
Spst1g01463 350 Pfam Protein tyrosine and serine/threonine kinase 27 220 IPR001245 GO:0004672|GO:0006468
Spst1g01463 350 SUPERFAMILY Protein kinase-like (PK-like) 27 222 IPR011009 -
Spst1g01463 350 Gene3D Transferase(Phosphotransferase) domain 1 42 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01463 Spst-Chr1 18316088 18317994 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01463 27 222 Receptor kinase-like Gene Family AT1G30570 38.571 4.83e-40 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Spst1g01463 PK_Tyr_Ser-Thr 1.5e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01463 - - pvu:PHAVU_008G028400g 279.256