Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01457 ATGGGCTTCTCTCTGTTACCAAAAGCAACTCCTTGCATTTTGTTCTTGGTTCTTCTGTCCTGTACTTGCTTCACTTCAACAGATGCTTATGACCCGCTTGACCCAATTGGGAATATCACAATCAAATGGGATATTATAAGTTGGACCCCTGATGGATATGTAGCTGTTGTTACAATGAACAACTTCCAACAATATCGTCATATTGCTTCACCTGGGTGGTCACTAGGATGGACCTGGGCAAAAAAGGAAGTAATATGGAGCATGATGGGGGGGCAGACCACTGAACAAGGAGATTGTTCAAAATTTAAGGGAGGTGTTCCACATTGCTGTAAGAAAGATCCGACAGTTGTAGATTTGCTTCCTGGAACACCTTACAATCAACAAATTGCAAATTGCTGCAAAGGTGGGGTTCTCAGTTCATTTGCGCAGGACCCGACCAATGCAGTTGCATCATTTCAAGTTAGTGTTGGTAGAGCTGGAACCACGAACAAAACTGTCAAAGTCCCAAAAAACTTCACCTTGAAAGCACCAGGACCAGGTTATACTTGTGGTCCAGCCAAGATTGTGAAACCCACTCAATTCATACAAGCAGACAAAAGGAGAGTGACCCAAGCACTGATGACATGGAATGTGACATGCACATACTCACAATTCCTAGCTCAGAAAACTCCCTCTTGCTGTGTCTCACTTTCATCTTTCTATAATGATACTATTGTTCCGTGCCCAACATGTGCATGTGGTTGCAAGAGTAACTCATCTCAGTCAGGGAGCTGTGTGGATCCAGGTGCCTCACATTTGGCATCGGTTGTATCTGGCTCTGGGAAGAATAATTTGTCACCTTTGGTTCAATGTACTAGTCATATGTGCCCAGTCCGAATCCACTGGCATGTTAAGCTAAACTACAAGGAGTACTGGCGTGTAAAGGTTACTATTACTAATTTTAACTACAGGATGAACTATTCTGAGTGGAACTTGGTTGTTCAACATCCAAACTTTGACAATTTGACTCAACTGTTCAGTTTCAACTACAAGTCATTGACCCCTTACGGTTCAATAAATGATACAGCAATGCTATGGGGAGTTAAGTTCTATAACGATTTTCTCAACCAAGCGGGCCCTAATGGCAATGTTCAATCCGAGCTACTCTTCCGAAAGGATAAATCAACTTTTACTTTTGATAAGGGATGGGCTTTTCCTCGAAGGATCTACTTCAATGGTGACAACTGTGTCATGCCACCACCTGATGCTTATCCATGGCTACCTAGTGCTGGTTCCCGGCAAGAGGTTTCCTTGCTTGCTTTAGTGGTATCTTCTTTGGTAGCCTTGGTATTTTATGCCCACGCTTAA 1347 0.4306 MGFSLLPKATPCILFLVLLSCTCFTSTDAYDPLDPIGNITIKWDIISWTPDGYVAVVTMNNFQQYRHIASPGWSLGWTWAKKEVIWSMMGGQTTEQGDCSKFKGGVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLSSFAQDPTNAVASFQVSVGRAGTTNKTVKVPKNFTLKAPGPGYTCGPAKIVKPTQFIQADKRRVTQALMTWNVTCTYSQFLAQKTPSCCVSLSSFYNDTIVPCPTCACGCKSNSSQSGSCVDPGASHLASVVSGSGKNNLSPLVQCTSHMCPVRIHWHVKLNYKEYWRVKVTITNFNYRMNYSEWNLVVQHPNFDNLTQLFSFNYKSLTPYGSINDTAMLWGVKFYNDFLNQAGPNGNVQSELLFRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPSAGSRQEVSLLALVVSSLVALVFYAHA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01457 448 Pfam COBRA-like protein 53 216 IPR006918 GO:0010215|GO:0016020
Spst1g01457 448 PIRSF COBRA 3 448 IPR006918 GO:0010215|GO:0016020
Spst1g01457 448 PANTHER PROTEIN COBRA 18 437 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01457 Spst-Chr1 18235302 18238456 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01457 1 447 COBRA Gene Family AT3G02210 73.230 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01457 - - gmx:100783820 905.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01457 1 18235302 18238456 Spst1g01457 1 18235302 18238456 ECH
Spst4g00305 4 3527553 3529941 Spst1g01457 1 18235302 18238456 PCT
Spst1g01457 1 18235302 18238456 Spst4g00304 4 3522891 3526096 PCT