Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01456 ATGGGTTTCTCTCTGTTACCAAAAGCAACTTCTTGCATTTTGTTTTTGGTTCTGCTATCTTCTACTTGCTTCACTTCAACAGATGCTTATGATCCGCTTGACCCCAATGGGAATATCACAATCAAATGGGATGTTGTATCCTGGACCCCTGATGGATATATAGCTGTTGTTACAATGAACAACTTCCAAAGATATCGTCATATTACTTCACCTGGCTGGTCACTAGAATGGACATGGGCAAAAAAGGAGATAATATGGAGCATGATGGGAGGGCAGACCACCGAACAAGGGGATTGTTCAAAATTTAAGGGAGGTATTCCACATTCTTGTAAGAAAACTCCAACAGTTGTAGATTTGCTTCCTGGAACACCTTACAATCAGCAAATTGCAAATTGTTGCAAAGGTGGGGTGCTCAGTTCATGGGTGCAGGATCCGAACAATGCAGTTGCATCATTTCAAGTTAGTGTTGGTGGAGCTGGAACCACAAACAGAACCGTCCAAGTCCCAACAAATTTCACCTTGAAAGCACCAGGGCCAGGTTATACTTGTGGACGAGCTAAGATTATCAGACCCACAATATTCATGAGTCTAGACAAAAGGAGAGTGACCCAAGCACTGATGACATGGCAGGTGGTATGCACATACTCTCAATTTCTAGCTCAGAAATATCCCACTTGCTGCCTCTCACTTTCATCTTTCCATAATAATACTATTGTGCCTTGCCCAACATGTTCATGTGGCTGCCAAAGTAGTTCATCTCAGTCAGGGCACTGTGCAAAGCCAGGTACACTAAATTTGGCCTCAGTTGTTTCTGGCTTTGGGAAGAACAAAGTTTCGCCTACGATTCAATGTACTAATCACATGTGTCCAATTCGAGTCCACTGGCATGTTAAGCTTGACTCCGAAAAGTATTGGCATGTGAAGGTTACTATTACTAATTTTAATTCCAGGATGAATTATTCTGACTGGAACCTAGGTATTCAACACCCGAACTTTGACCATCGGACCCAAGTGTTCGGTTTCAGCTACAAGCTAATGACTCCTTATGATTCAATAAATGATACAGCACTGTTGTGGGGAATGAAGTCCCAACATGATCATTTTCTCAACCTAGCTGGTCCTAATGGCAAGGTTCAAGGAGATATACTCTTCCGAAAGGATAAAGCAACTTTTAGCTTTGATAAGGGTTGGGCTTTTCCTCGAAGGATCTTCTTCAATGGTGACATGTGTGTGATGCCACCACCTAGTGCTTATCATTTATAG 1263 0.4236 MGFSLLPKATSCILFLVLLSSTCFTSTDAYDPLDPNGNITIKWDVVSWTPDGYIAVVTMNNFQRYRHITSPGWSLEWTWAKKEIIWSMMGGQTTEQGDCSKFKGGIPHSCKKTPTVVDLLPGTPYNQQIANCCKGGVLSSWVQDPNNAVASFQVSVGGAGTTNRTVQVPTNFTLKAPGPGYTCGRAKIIRPTIFMSLDKRRVTQALMTWQVVCTYSQFLAQKYPTCCLSLSSFHNNTIVPCPTCSCGCQSSSSQSGHCAKPGTLNLASVVSGFGKNKVSPTIQCTNHMCPIRVHWHVKLDSEKYWHVKVTITNFNSRMNYSDWNLGIQHPNFDHRTQVFGFSYKLMTPYDSINDTALLWGMKSQHDHFLNLAGPNGKVQGDILFRKDKATFSFDKGWAFPRRIFFNGDMCVMPPPSAYHL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01456 420 PANTHER PROTEIN COBRA 18 419 IPR006918 GO:0010215|GO:0016020
Spst1g01456 420 PIRSF COBRA 3 420 IPR006918 GO:0010215|GO:0016020
Spst1g01456 420 Pfam COBRA-like protein 53 216 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01456 Spst-Chr1 18228891 18231658 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01456 1 418 COBRA Gene Family AT3G02210 65.412 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01456 - - gmx:100782876 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01456 1 18228891 18231658 Spst1g01456 1 18228891 18231658 ECH
Spst4g00304 4 3522891 3526096 Spst1g01456 1 18228891 18231658 PCT