LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst1g01445	ATGGTTGAGGCAGTTGTGTCCTTTGCAGTTGATAGGCTTGCTGATCTACTGATTGAAGAGGCCAGATTGTTAAAGGGGGTGAGTGACGAGGTCAAAAGCATGCAAAATGAACTAAAGAGGATGCAATGCTTCCTAAGAGATGCTGAGCGCAGGCAGGATGAAGGTGATACTATAAAGAATTATATTTCGGAGGTTAGAAAATTAGCCTACGATGCAGAGGACGTGATTGAAATTTATGCTATTAAGGTTGCATTTGGCATAAGTATTGGAACTAGAAATCCACTCTCCAGAACTAAACATATTCACAAAGTTGGCTCTGAGCTCGTATCAATCAATTCTCGAATATCTGACCTCACAAGAAGCTTACAAACTTATGGTTTGACTGCAACAAAAGACAATGAAGAGGCATCTGAGGTGAAAAGAGAATTGAGATGGTCTTATTCTCACATTGTTGAAGAGTTCATTGTTGGCTTAGATAAGGATATAAACAAAGTGGCAGAATGGCTATTAAATGAAAGTCAGGACTGTCGATTCGCTTATATTTGTGGAATGGGTGGTCTTGGTAAAACTACACTTGCCAAAGGCATTTACCATTACAATGCAATTAGGCGAAACTTTGATGGTTTTGCGTGGGCCTATATATCTCAGCAATGCAAGAAAAGGGACGTTTGGGAGGGAATTTTACTGAAGCTTATTTCTCCTACCAAAGAGGAAAGGGATGAGATTACGAAAATGAAAGATGATGAACTAGCAAGGAAGTTGTTTAAAGTTCAGCAAGATAAAAAATGTTTGATCATCCTGGATGACATATGGAGCAATGAGGCATGGGACATTTTAAGTCCTGCATTTCCATCTCAAAATACAAGGACTAAGATAGTTTTTACATCCCGCAATAAAGACATTTCATTGCATGTGGATCCTGAAGGCTTGCTTCACGAACCTAGTTGCTTAAATGCAGAGGACAGTTGGGCATTGTTTAAGAAAAAAGCTTTCCCAAGACAAGATAACCCAGAATCCACAATTTCTGATAACTTCAAAAGATTAGGCAGAGAAATGGTTGCAAAGTGCGGTGGTCTGCCTTTGGCTATCATTGTTCTTGGAGGGCTTTTGGCTACAAAGGAGTCAGTCCCCGAGTGGGAAAAAATACATAAGCATCTAAGTTCATACCTAATGGGAGGAGAGATACGTGATAGGAGAAGATTAGATGAAGTGTTGGATTTAAGTTATCAGGACTTGCCTTGTCAACTGAAACCATGTTTTCTCTATTTAAGTCAATTCCCTGAAGATTCTGAGATACCAAAAACTAAACTAATGCAGTTATGGGTAGCAGAAGGTGTTGTTTCGTCTCAATATGAGATTGGACGGGATGAGACAATGGAGGATGTTGCTGAACGCTTCCTAGGTAACTTAATTAGCCGCTGCATGGTTCAAGTTGGTCAGAAGGGGTCTACTGGTCGGATTAAAACCTGCAGGCTCCATGATTTAATGCGTGATCTGTGTTGGTCCAAGGCCAGAAAAGAAAATTTTCTCTACATTATTAATAGATCACAACAAAATAGTACCATTGATGTTACTTCATCTAATGTATCAGATGCAAGGCAAATTGATGAGGTTCGTAGGTTTGCTGTCTACTTGGATCAACATATTGATCAGTTGATTCCACAAGACAAGCAAGTGAATGAACACCTCAGATCCCTTGTATTTTTTCATGACAAGAAGTGTAGGATGGAAAATTGGGACCTAGTCAGAGGCATTTTTGTGAAGTTCAAATTACTTAGAGTTCTAGATCTTGAAGGAATTAAGGGACTGAAGGGACAATCATTGCCTAAAGAAGTGGGGAATCTTTTATGGTTGAAGTTTCTGAGCCTGAAAAGGACTCGTATTCAAGTGCTGCCATCTTCCTTGGGTAATTTGGAGAATCTGCAGTTCCTAAATTTGCAAACTGTCAATAAAGTGAGCTGGGATTCAACAGTGGAAATTCCAAATGTAATATGTAAGTTGAAACGGTTGAGGCATCTATATCTTCCAAATTGGTGTGGGAATATTTCTAACAACCTGAAATTAGAAAATTTGACTAATTTACAGACGTTAGTAAATTTTCCTGCCAGCAAATGTGATGTTAAAGATCTATTGAAGTTAAAAAAGCTCAGAAAGTTAGTACTGAATGACCCAAGACATTTTCAAAAGTTTAGTGAAAGTTTCAGTCCCCCTAATAAAAGGTTGGATTGCCTTCTATCCTTGTCTTTAAGGACTGACATGCTCTCTTTCCCTGAAAATGTGGTAGATGTTGAAAAATTGGTGTTAGGCTGTCCTTCCCTCCGTAAGCTGCAGGTTGAAGGGCGGATGGAAAGGCTGCCAGATGCCTCACTGTTTCCTCCACAGCTTTCAAAGTTGACTATATGGGGTTGCAGACTTGTGGATGATCCAATGGCAACACTAGAGAAGCTTCCTAACTTGAAGTTTCTAAATGGGTGGGATATGTTTGTTGGAAAGAAAATGGCATGCTCACGAAATGGTTTCCCTCAACTTGAGGTTCTAGTACTTCGTGGCTTGCACAATTTAGATGAGTGGACAATAGAGAATCAAGCCATGCCTAATCTTCACCGATTGAGCATATCTGATTGCAACAATTTAAAGGCGGTTCCTGATGGGCTAAAATATATTACTAGTCTTCGGGAGCTAGAAATCAGATGGATGCCTAAATCATTCAAGACCAGGCTTGGAACTGCTGGAGAGGATTACCAGAGAGTCCAACATGTTCCATCTATTGTATTTTTGAACTAA	2784	0.3962	MVEAVVSFAVDRLADLLIEEARLLKGVSDEVKSMQNELKRMQCFLRDAERRQDEGDTIKNYISEVRKLAYDAEDVIEIYAIKVAFGISIGTRNPLSRTKHIHKVGSELVSINSRISDLTRSLQTYGLTATKDNEEASEVKRELRWSYSHIVEEFIVGLDKDINKVAEWLLNESQDCRFAYICGMGGLGKTTLAKGIYHYNAIRRNFDGFAWAYISQQCKKRDVWEGILLKLISPTKEERDEITKMKDDELARKLFKVQQDKKCLIILDDIWSNEAWDILSPAFPSQNTRTKIVFTSRNKDISLHVDPEGLLHEPSCLNAEDSWALFKKKAFPRQDNPESTISDNFKRLGREMVAKCGGLPLAIIVLGGLLATKESVPEWEKIHKHLSSYLMGGEIRDRRRLDEVLDLSYQDLPCQLKPCFLYLSQFPEDSEIPKTKLMQLWVAEGVVSSQYEIGRDETMEDVAERFLGNLISRCMVQVGQKGSTGRIKTCRLHDLMRDLCWSKARKENFLYIINRSQQNSTIDVTSSNVSDARQIDEVRRFAVYLDQHIDQLIPQDKQVNEHLRSLVFFHDKKCRMENWDLVRGIFVKFKLLRVLDLEGIKGLKGQSLPKEVGNLLWLKFLSLKRTRIQVLPSSLGNLENLQFLNLQTVNKVSWDSTVEIPNVICKLKRLRHLYLPNWCGNISNNLKLENLTNLQTLVNFPASKCDVKDLLKLKKLRKLVLNDPRHFQKFSESFSPPNKRLDCLLSLSLRTDMLSFPENVVDVEKLVLGCPSLRKLQVEGRMERLPDASLFPPQLSKLTIWGCRLVDDPMATLEKLPNLKFLNGWDMFVGKKMACSRNGFPQLEVLVLRGLHNLDEWTIENQAMPNLHRLSISDCNNLKAVPDGLKYITSLRELEIRWMPKSFKTRLGTAGEDYQRVQHVPSIVFLN	927

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst1g01445	927	Gene3D	-	316	413	IPR042197	-
	Spst1g01445	927	CDD	RX-CC_like	3	120	IPR038005	-
	Spst1g01445	927	SUPERFAMILY	L domain-like	492	903	-	-
	Spst1g01445	927	Gene3D	-	140	308	IPR027417	-
	Spst1g01445	927	Pfam	NB-ARC domain	159	410	IPR002182	GO:0043531
	Spst1g01445	927	Gene3D	-	5	116	-	-
	Spst1g01445	927	FunFam	Probable disease resistance protein At1g63360	409	502	-	-
	Spst1g01445	927	PRINTS	Disease resistance protein signature	356	370	-	-
	Spst1g01445	927	PRINTS	Disease resistance protein signature	257	271	-	-
	Spst1g01445	927	PRINTS	Disease resistance protein signature	178	193	-	-
	Spst1g01445	927	PRINTS	Disease resistance protein signature	862	878	-	-
	Spst1g01445	927	FunFam	Probable disease resistance protein At1g61300	137	308	-	-
	Spst1g01445	927	PANTHER	DISEASE RESISTANCE PROTEIN RP	31	876	IPR044974	GO:0006952
	Spst1g01445	927	Coils	Coil	31	51	-	-
	Spst1g01445	927	FunFam	Probable disease resistance protein At5g66910	316	408	-	-
	Spst1g01445	927	Gene3D	Ribonuclease Inhibitor	527	911	IPR032675	-
	Spst1g01445	927	Gene3D	-	415	501	IPR036388	-
	Spst1g01445	927	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	139	423	IPR027417	-
	Spst1g01445	927	Pfam	Rx N-terminal domain	5	83	IPR041118	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst1g01445	Spst-Chr1	18143091	18146741	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst1g01445	156	927	WRKY Transcription Factor Family	AT5G45050	21.848	9.09e-07	51.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst1g01445	-		-	vra:106759398	1694.09