Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01439 ATGTCTGGAAATTTGAAATCCTTGAAGGATGAAAACCCAGATTTGCAGAAGCAAATTGGGTGCATAACTGGATTTTTTCAGCTCTTTGACCGTCACCATTTCCTCGCCGGCCAACGCTCTGGCATCTACCTTCAGCACAGGCCTCCTTCAGGCAAATGGTTAAGCAAACAAATGCGCTTTTCTAACAACATTAGGAAAGCAAAGAATATGAAGAGTGCAAGAGAAAAGCAACAATTCTCCACAGAATCATCCAAAACTTCTTTGTCTTCATCCTCTTGTTCATCTAGCATGTCATCCCTTGAGTTTAACAGAACAATTCAGATGCAATCATCATCAAGAAATCAAACAAGAATTCCTGAAAACACAAAATCAAAAGTAGCAAAGAAGCAATTTGATACCCCCCGCCAACAATCCCACCATTTTCATCATATTGTCAAAGACTCAATGCATAAAGAAGCTGAAGGATTGTCTGTGAAAACTGTAGCTGAAGAGGAAAAGAAGGGTCAGACCTTGAAACTCATAGACTCTCCCCGGCCTTTCCGGTCACACAAATCTGTCAATGCAGGAGTTGCAGTTGCCAGTGAACCATTCCATACTCTTGCCAGGTCCAGGAAAACACCTTGGGACTCACCACGGCTCTCTTATGATGAAACATTCAAATCTGCCACAAAGCATAAGGAATTCCCAAGGCTTTCCTTGGACAGCAGAGAAGGGTCCAATAGAGGTTACAACGAAGGAAACAAGTCTCGCAACCTGTTGAAGGGTCAACAGAAAGATTATGCAAAGAACTCTGGCACAATGATTAACCAGCTGCAAGAACCAGATACTTCCAAAAGATCTTCCAGTGTTGTAGCTAAGTTGATGGGACTTGAAGCCCTCCCGGAGTGTACACAAACTCGTGGGAGTCCAATTGGAAATTCTAGTTGCTCTACCAAAAAGAATGAGCTCTTGGCAAGATCTAGCACAAGTGATGAAGATAAGCAGCATCAAAAGTTCACCTTGCCACAGTTTAGAAAGGCTGATTCAATCACAAATGAGAAGCCATATTCACGATTTGCATTAGAATCAACTCCTTGGAGGCAACCAGATGCAATCCAAAGTTCTCAATTACAAGCTTCCAAGGGTTGTGAATCTGATGTAAAAGTCTCAAAGACCTCTCTCACTGTATACGGGGAAATTGAGAAAAGGGTGGCAGAACTTGAGTTCAAAAAGTCTGGAAAGGATCTCAGAGCCCTTAAACAGATTCTTGAAGCAATGCAGAGACGTAAAGATTCGCTAGACAATGCTAGAGATCAGGCTTCAAATTCTACATCTGACAATAAGAATGGTACTAATTCCAATGAAAGCTCGAACTTACAAAGCCCACGAGTACGACAAAAAGACCTGGCATCTGTCACGGTTGAGATGTCAAATTCTACCCGGCATAGCAAATTGCCAATTGTCATCATGAAACCTGCGAAAGTTACTAGCAAAGTCAATAATCCTTCTCCTACAGAATTATCAGTTCATGGTAAATCTGGTCTCAGCAAGAGTTCCCCAAGTAATCCAACAAATGCAAGATTGGTTGACAAGCATGGTGCTAAAGGCATAAGTTCAACAAAAAATGTCAAGGATCCTCTTGGCCAACAAGTTCGTCCATCATACAAAAACAACACCAGAACTTTAAAATTGATGCAATCCTTGAAAGTTTCTCAAGACAGCAATGGAGAATGCACCACCAATTCTGGTTATATAACAGTGACTGGGAGCCCCAGATCACAGAAGAAGTGTGGTCTGGAGAGGTGTTCGCAGGCAACAAGTCCAACATCAGATTCCTGCATTAACAAAAGAGAGCACAATAGGCAACCTGTGGAATTGTCTTCTCCAAGTACAACGCCAAGACAAAAGTTCTCCAGTTTGCAGCAAAGAAATGAACGTTTCAGTGAGATTAGCTGTAACTGGAGGGATCTTAAGCACCATGTTAATGTCATTTCGGACTTTGATGACAAAAGCAGCTCGGCCAGTCACAGTGAGATAGAAGTCATTCGAATTGATCAATCTGGAAAGATCATTAGCTCCTGCATCCAGCTGAGTTGCATGAATCAAAATAATGAATTTGAAGAGTTGAGGAAGGCTGAGACAATGGTTACTGCAGATCAACCAAGTCCTGTGTCCGTTCTTGATACTGCATTCTATAGAGATGACCCTCCATCTCCAGTGAAAAAGAAATCCGACATCTCAAAATATTTAGGTGAATCTCTAAGCACTGATGATGATAGTGAAGAGAACTCAGCGGATATACTTCAAGAAATTGACTGGATTGAAGAGAAACTCCTCAATTTCAATAACAGTAAGCATCCTGACCATAAGTATATAATAGAAATACTATTAGCATCAGGTCTACTCAGTGGCCACAGCTCTAGCCAGATATTTCATTCGCCGGGTCACTTGATTGATCCAAAGTTGTTCTTTGCACTTGAACAAATGAAAACAAAGAAGAGACATTTTAACATTGAAGACAATGCCAAGAAGATTGCCAGGATTATAAATCCTGAGAAGATGCAAAGAAAACTCATATTTGATGTTGTCAATGATATTTTAGTTCAAAAGCTGATATTGGATAGTTCTTCTGCATTGTGGTGCCAACCAAATGAGTTAGCAGGCAGAACACCAAAAGGACAGCAGCTTTTGGATGAGCTGTGCACTGAAATAGATCAGTTGCAACCTCAAAATGGGCATATCAGTTTAATTCAGGAGGATGAGAATTTGAAGCATTATCATGCAATTTGGACTAACTGCTGCAATGAGATGCCAAATATTGTGTTGGATATTGAACGTTTGATCTTTAAAGATTTGATAACTGAGGTTGTGAGAGGCGAAGTAGCAAACGATCCTGGTAGACATTGCAGGCAAGTAGTGTTTTCAAGTAGGAACTTTAGCTAA 2922 0.409 MSGNLKSLKDENPDLQKQIGCITGFFQLFDRHHFLAGQRSGIYLQHRPPSGKWLSKQMRFSNNIRKAKNMKSAREKQQFSTESSKTSLSSSSCSSSMSSLEFNRTIQMQSSSRNQTRIPENTKSKVAKKQFDTPRQQSHHFHHIVKDSMHKEAEGLSVKTVAEEEKKGQTLKLIDSPRPFRSHKSVNAGVAVASEPFHTLARSRKTPWDSPRLSYDETFKSATKHKEFPRLSLDSREGSNRGYNEGNKSRNLLKGQQKDYAKNSGTMINQLQEPDTSKRSSSVVAKLMGLEALPECTQTRGSPIGNSSCSTKKNELLARSSTSDEDKQHQKFTLPQFRKADSITNEKPYSRFALESTPWRQPDAIQSSQLQASKGCESDVKVSKTSLTVYGEIEKRVAELEFKKSGKDLRALKQILEAMQRRKDSLDNARDQASNSTSDNKNGTNSNESSNLQSPRVRQKDLASVTVEMSNSTRHSKLPIVIMKPAKVTSKVNNPSPTELSVHGKSGLSKSSPSNPTNARLVDKHGAKGISSTKNVKDPLGQQVRPSYKNNTRTLKLMQSLKVSQDSNGECTTNSGYITVTGSPRSQKKCGLERCSQATSPTSDSCINKREHNRQPVELSSPSTTPRQKFSSLQQRNERFSEISCNWRDLKHHVNVISDFDDKSSSASHSEIEVIRIDQSGKIISSCIQLSCMNQNNEFEELRKAETMVTADQPSPVSVLDTAFYRDDPPSPVKKKSDISKYLGESLSTDDDSEENSADILQEIDWIEEKLLNFNNSKHPDHKYIIEILLASGLLSGHSSSQIFHSPGHLIDPKLFFALEQMKTKKRHFNIEDNAKKIARIINPEKMQRKLIFDVVNDILVQKLILDSSSALWCQPNELAGRTPKGQQLLDELCTEIDQLQPQNGHISLIQEDENLKHYHAIWTNCCNEMPNIVLDIERLIFKDLITEVVRGEVANDPGRHCRQVVFSSRNFS 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01439 973 MobiDBLite consensus disorder prediction 237 255 - -
Spst1g01439 973 MobiDBLite consensus disorder prediction 76 121 - -
Spst1g01439 973 Pfam Domain of unknown function (DUF4378) 781 948 IPR025486 -
Spst1g01439 973 PANTHER LONGIFOLIA PROTEIN 1 966 IPR033334 GO:0051513
Spst1g01439 973 MobiDBLite consensus disorder prediction 489 519 - -
Spst1g01439 973 MobiDBLite consensus disorder prediction 582 632 - -
Spst1g01439 973 MobiDBLite consensus disorder prediction 617 632 - -
Spst1g01439 973 Coils Coil 409 436 - -
Spst1g01439 973 MobiDBLite consensus disorder prediction 489 546 - -
Spst1g01439 973 MobiDBLite consensus disorder prediction 122 139 - -
Spst1g01439 973 MobiDBLite consensus disorder prediction 299 317 - -
Spst1g01439 973 MobiDBLite consensus disorder prediction 230 255 - -
Spst1g01439 973 MobiDBLite consensus disorder prediction 422 471 - -
Spst1g01439 973 MobiDBLite consensus disorder prediction 67 139 - -
Spst1g01439 973 MobiDBLite consensus disorder prediction 297 335 - -
Spst1g01439 973 MobiDBLite consensus disorder prediction 582 606 - -
Spst1g01439 973 MobiDBLite consensus disorder prediction 430 471 - -
Spst1g01439 973 MobiDBLite consensus disorder prediction 318 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01439 Spst-Chr1 18038936 18043661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01439 144 955 TRM (TON1 Recruiting Motif) Superfamily AT1G74160 31.533 1.04e-84 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01439 - - vun:114182931 1517.67