Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01437 ATGGTACCGTGGAACAGAATTTTGACAAGCATAAAGTGGAAGGACAAAACTCTGCACCTGGCAACCAAAAATGAGATACATAAGATCATGATTAAGAGCCCAAAAGAAGTGGATTTTCCGTTAAAACAGGAGGGTGGTCATTCTCAATCAATTAGTGATCCTGAAAAAGCAAAGGCTTCATCAAGCTCAGCAGCACAATGGCCAAGATTGAAGGATCCAAGGATTGTTCGAGTATCTAGAGCCTTTGGAGGAAAAGACAGGCATAGCAAGGTTTGCACAATAAGAGGGTTAAGAGACAGACGGGTGAGATTATCAGTACCAACTGCTATCCAACTCTATGATCTTCAAGATAGGCTAGGGCTCAGTCAACCAAGCAAGGTTGTTGATTGGTTGCTCAATGCAGCGAAGCATGAAATTGATGAACTTCCACCACTGCCAATTATTCCTTCAGTGAATAACTTCAACCTTGGTTATCCCTCTGCTGTTACTTCTAATGAAGCTACAACCTCTCACTCCCAGCCTCATGAACAACTTCTGAATACCAATAGCAGCATTCAGTGGCAAGGTTCAAACCAAAATTCTGCATGGAAATTGAAGCCTAAAGAAGTTTCAGGAGAAATTATTAGCATTGACAAAGCAAACTGGATAAATAGAAGTGAAGATGATAAGCAAGGAAGCAATAATGAAGGTCCTAGCACACATGTTATACCAAATAATCTCTTTCCAAGGGCAAACAATCCTTCATTCTTGGGCCTGCTAAATACTATGCCACATGCTTACCAATGGGAACCTTCAGCTGGTGATGTTTCTCATCAGTTGGCAAACAATGGATTTTCAAACCAAACAGACATACATAGCATTAACGTTGTACCTTTCCCAACATCAACGTTGTCTTTATCTACCGGGAATTCTCAAATTATGCTATGTCCTCCAGGAGCAGCACAGCCATATTTTCCTTCACATTTTACAGCAATGGACTATCAGATGTTAAGTTCAGGTTCTCAAAACCCATTCGCAAATTCTCTCAATCATTCTTTCAGTTTGGCTATGATGTCTCATAAACCTCTCCATTCACCCAAGAGCAGCAAAAGCCCATCCCACAAAGAGCAAGATTTCCCTTCCAAGTGA 1128 0.4105 MVPWNRILTSIKWKDKTLHLATKNEIHKIMIKSPKEVDFPLKQEGGHSQSISDPEKAKASSSSAAQWPRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLNAAKHEIDELPPLPIIPSVNNFNLGYPSAVTSNEATTSHSQPHEQLLNTNSSIQWQGSNQNSAWKLKPKEVSGEIISIDKANWINRSEDDKQGSNNEGPSTHVIPNNLFPRANNPSFLGLLNTMPHAYQWEPSAGDVSHQLANNGFSNQTDIHSINVVPFPTSTLSLSTGNSQIMLCPPGAAQPYFPSHFTAMDYQMLSSGSQNPFANSLNHSFSLAMMSHKPLHSPKSSKSPSHKEQDFPSK 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01437 375 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 42 341 IPR005333 GO:0003700
Spst1g01437 375 ProSiteProfiles TCP domain profile. 84 142 IPR017887 -
Spst1g01437 375 MobiDBLite consensus disorder prediction 219 240 - -
Spst1g01437 375 MobiDBLite consensus disorder prediction 39 68 - -
Spst1g01437 375 MobiDBLite consensus disorder prediction 353 375 - -
Spst1g01437 375 MobiDBLite consensus disorder prediction 45 67 - -
Spst1g01437 375 Pfam TCP family transcription factor 84 203 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01437 Spst-Chr1 18013231 18014358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01437 67 156 TCP Transcription Factor Family AT3G02150 82.222 2.89e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Spst1g01437 TCP 1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01437 - - var:108327895 649.047