LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst1g01434	ATGAAAGTGGTTCAAGTTTTCAACATAGCACCAATTTCAGAATCAAAAGAGTTATCAACTCAAACAACGATTCCCCTCACCTTCTTTGACATACTATGGTTAAGGTTACCACCTGTTCAACGCGTCTTCTTCTATCAATTCCCTCATCCAGCTCCTCTCTTCTTTCACACCCTCCTTCCCAATCTCAAACACTCTCTCTCTCTTGCACTTGGCCACTTTTTCCCACTTGCTGGACACCTCATTTGGCCCCTTCACTCCCACAAACCTATCATCAGTTGCAAAACCGGTGAAACTGTTTCCCTCACTGTAGCTGAATCTGAGGCTGATTTCAACCATCTAGCGGGCACAGATCTTTCTGAAGCTAGCGAAATCGACCAACTTTTACCCCATTTGACCATATCCCATGATCAAGCTAATGTTTTAGCTTTGCAAGTTACTCTATTTCCAAACTCTGGATTTTCCATAGGAATAATCTCACACCATGCTGTTCTAGATGGCAAGACTTCAACATCATTTATCAAATGTTGGGCTTATCTTTGTAGAGAATCAGCCTCTTCTTTGCCACCTGAACTGAGTCCTTTTTTGGACAGAGAAGGAGTGAAGGACCCCAATGACCTAGGAGCAAGATATGCCAGTGATTGGTTAAACCAGGATGGGCCCAACAACAGAAGCCTCGAAGTTTGGGATCTGCAACTCCCAGAAGATGCAACTAGAGGCCTTTTTCATCTCTCTCGTTCGGATATTGAAAAGCTAAAGCAGATTGTGTTGTCCAAGAAGACATGGAACAACAGCAACCTTCGCTTGTCAACGTTTGTGTTATCCATTGCTTATGCTTGGGTCTGCAGGGTGAGGGCAGAGGAAACAAAAAACAGAAAAGTTATTTTGGCTTTAAACGTTGATTGTAGGGCACGTTTGGAGCCACCAGTTCCTGCAACGTATTTTGGGAACTATGTGGGGGCGAGGCTTGCAATTGTTGAAACAAAAGAGATATTGGGGGAGGATGGACTAATTGTAGCAGTGGATAGTGTGAATGAGAGTTTGGAAAATCTGAAAGAGGGAGCGCTGAGTGGGGCAGAAAATTGGTCAAAGTGGTTGCTTGACGGTTTCCGAGATGATGTGAGGATAATTGGCGTTGCTGGATCACCAAGGTTTGATGTTTATGGCAATGACTTTGGTTGGGGAAGACCAAAGAAGGTTGAGATGGCTTCAATAGACAGAACTGGGGCATTTTGTTTGTCAGATAGCAGAAGTGGTGATGGAATTGAGATAGGTTTCGTGTCCAGCAAAGAAGCGATGGAGACCTTTGCTTCTCTCTTTCTCAATGGCCTCCAATCTTGA	1338	0.441	MKVVQVFNIAPISESKELSTQTTIPLTFFDILWLRLPPVQRVFFYQFPHPAPLFFHTLLPNLKHSLSLALGHFFPLAGHLIWPLHSHKPIISCKTGETVSLTVAESEADFNHLAGTDLSEASEIDQLLPHLTISHDQANVLALQVTLFPNSGFSIGIISHHAVLDGKTSTSFIKCWAYLCRESASSLPPELSPFLDREGVKDPNDLGARYASDWLNQDGPNNRSLEVWDLQLPEDATRGLFHLSRSDIEKLKQIVLSKKTWNNSNLRLSTFVLSIAYAWVCRVRAEETKNRKVILALNVDCRARLEPPVPATYFGNYVGARLAIVETKEILGEDGLIVAVDSVNESLENLKEGALSGAENWSKWLLDGFRDDVRIIGVAGSPRFDVYGNDFGWGRPKKVEMASIDRTGAFCLSDSRSGDGIEIGFVSSKEAMETFASLFLNGLQS	445

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst1g01434	445	Gene3D	-	232	445	IPR023213	-
	Spst1g01434	445	Pfam	Transferase family	15	437	-	-
	Spst1g01434	445	PANTHER	-	2	444	-	-
	Spst1g01434	445	SUPERFAMILY	CoA-dependent acyltransferases	234	445	-	-
	Spst1g01434	445	Gene3D	-	1	225	IPR023213	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst1g01434	Spst-Chr1	17951718	17953055	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst1g01434	42	440	Monolignol Biosynthesis Gene Families	AT5G48930	24.515	1.60e-21	94.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst1g01434	-		-	gmx:102660160	709.523