Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01429 ATGGCTCCAAATAATGGACGTGGAGCAAGTGAGATCTTCCAAGGTCAAGTTCTCTTGTACAAGTCCCTGTATGGCCATATGGATGCTATGACTCTTAAATGGTTCATTGAGCTTGGCATACCAGACATAATCCACAATCATGGTCAGCCCATTACACTGCCCGAGTTGATGTCAGTTCTACAAGTTCCACACACTAAAGCTAGTGGCGTGCAGAGTCTCATGTGCTACCTGGCACACAAGGGATTCTTTGAGATAGTAAGAGCCCATGACAAAGCAGAAGAAAAGCAAGCATATGCTCTCACTGCTGCGTCAGAGCTTCTTGTCAAAGGCAGTGACCTTTGTCTGTTGCCAATGATGGAGTGCTTTCTTGGCCCAGATTTTTCAACTATATGGTCTCAGTTAAAGAAGTGGACTTATGAGGATAATCTCACCCTATATGATGTCTCCATAGGAACAACTTTATGGGAACTTCTCGATAAAAACCCTGCACGTAACAAGTTATTCAATGACGCAATGGCTAGTGATTCCCAGATGATGAACATGGCGTTGAGAGGTTGCAATTGGGTGTTTGAAGGAGTGGAGTCCATGGTGGATGTTGGTGGTGGAACTGGAATCACAGCCAAGACTATCTGTGAGGCATTTCCTAACATGAAATGCATCGTCTTGGAACTTCCACGTGTTGTAGAAAACTTGGCAGATAGCAACAATTTGACGTATGTTGGTGGGGACATGTTTATATCTATTCCCAAGGCTGACGCTGTTCTTCTTAAGTGGATTTTACATAACTGGAGTGACAAGGATTGTAAGAAGATATTAGAAAATTGTAAAAAAGCAATTTCTGATAAAGGAGGAAAAGTAATTGTGATAGATGTTGTGATAAACGAAAACGAAGATGAGCACGAACTTACTGGACTGAAACACCTCATGGACATAACCATGGCATGTCTTATTAATGGAAAAGAGAGAAGAGAAGAAGAATGGAAGAAGCTGTTTTTGGAAGCAGGGTTCCACAGCTACAAAATATCTTCTTTGACAGGACATCTGTCTCTTATTGAGATCTTCCCTTAA 1068 0.4185 MAPNNGRGASEIFQGQVLLYKSLYGHMDAMTLKWFIELGIPDIIHNHGQPITLPELMSVLQVPHTKASGVQSLMCYLAHKGFFEIVRAHDKAEEKQAYALTAASELLVKGSDLCLLPMMECFLGPDFSTIWSQLKKWTYEDNLTLYDVSIGTTLWELLDKNPARNKLFNDAMASDSQMMNMALRGCNWVFEGVESMVDVGGGTGITAKTICEAFPNMKCIVLELPRVVENLADSNNLTYVGGDMFISIPKADAVLLKWILHNWSDKDCKKILENCKKAISDKGGKVIVIDVVINENEDEHELTGLKHLMDITMACLINGKERREEEWKKLFLEAGFHSYKISSLTGHLSLIEIFP 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01429 355 PIRSF O-mtase 1 355 IPR016461 GO:0008168
Spst1g01429 355 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 355 IPR016461 GO:0008168
Spst1g01429 355 Gene3D Vaccinia Virus protein VP39 108 355 IPR029063 -
Spst1g01429 355 Pfam O-methyltransferase domain 131 336 IPR001077 GO:0008171
Spst1g01429 355 CDD AdoMet_MTases 197 293 - -
Spst1g01429 355 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 352 IPR029063 -
Spst1g01429 355 PANTHER O-METHYLTRANSFERASE 29 340 IPR016461 GO:0008168
Spst1g01429 355 FunFam O-methyltransferase ZRP4 109 355 - -
Spst1g01429 355 Gene3D - 2 107 IPR036388 -
Spst1g01429 355 FunFam Coniferyl alcohol 9-O-methyltransferase 3 107 - -
Spst1g01429 355 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Spst1g01429 355 SUPERFAMILY "Winged helix" DNA-binding domain 10 111 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01429 Spst-Chr1 17730667 17733182 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01429 30 354 Monolignol Biosynthesis Gene Families AT5G54160 30.120 1.60e-43 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01429 K22588 K13262 gmx:100811609 533.487