LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst1g01427	ATGAGAATCAACCTAACCCAAATGATAACTTTGCACACTTCCTGCCACACTCCATCATCTTCACAATCACAGCCTTCTCCGCCACCACCACATTCCCAGATGGCCCTACAAACAGCTACTCCTCCAACCACTCCAAGCGCCCAAGTTGTTGGTAATGCATTTGTTGAGCAGTATTACCATATTCTTCACCATTCACCAGATTTGGTCTATCGGTTTTACCAGGACTCTAGTGTTATAAGCCGTCCTGATTCCAATGGTGTGATGACATCAGTTACAACCATGAAAGGCATTAATGAGAAGATTCTTTCACTAAATTTCAAGGAATTTAAAGCAGAGATTAAGACTGCAGATGCTCAAAAATCATACAAGGAAGGAGTGACTGTGCTGGTTACTGGATGCTTGACTGGCAAGGATAACATGAGAAGAAAATTTGCGCAGTCATTCTTTCTTGCTCCACAAGACAATGGCTATTTTGTTCTTAACGATGTTTTTAGGTATGTAGAAGACCATGAACCATCAGAACTGCCTCCAGTTAGTGGAGATGGTGATGCATCTGCTGTTACAGTAACCCCCGAACCAGAACCCAGTGTTGTTGCTGATTCTCCTGCCCCAGACCCTGCAAATTCTCATGTGAACAAGGGTCCAATTGTTGCTGGAAATGCTTATGATCATCATGAGAGACAGATACCTGTTGAAACTGAAGACAATGTAGAACCCCATTTTCAGTCAAATGGCAATGATGATTCTCAGGCCACAGAAGTGGCTTCTTTGGCTCAGGAGGATGCTCCAAAGCAGTCTTATGCATCAATTGTGAAAGTCCAAAAAGGGAGTTCAGTACCAACTAAAGTTTATGTGCCTACTAATACATTAAAGTCAGGGCCTAACAAAAATGAGAGCTTGGTAGTTGAGTCAGTGGAATCTAATGAAGTGCCTGAAGCAGCTTTGGATAGTGTAAACAGCCCTGAAAGTAGTGATGCTCATGAGGAAGTTGAAGGACACTCCATTTACATTCGAAACCTGCCTCTGAATGTGACGGTTGGTCAGTTGGAAGTGGAGTTTAAGAAATTTGGACCCATCAAGCCGGGAGGAATCCAAGTCAGAAATAATAAGCAGCAGGGATACTGTTTTGGCTTTGTGGAGTTCCTATCTCTAAATTCAATGAATAATGCGATTCAGGCTTCACCTATTCCTATTGGGGGGCGTCAGGCTGTAGTCGAGATAAAGAGAACCACTACTCGAGTTGGCAGCGGCATTAGCAATACTGGAAGACCTAGGATCCCAATCGGCAGGGGTGGGTTACGAAATGACACCTTCAGGGGCCGGGGGAACTATGGTGGCGGTCGTGGATATGGTCGAAATGATTATGGAAGCCGTGGTGGTGACTTTTCTGGTAGAGGTCGTGGTCATGGTGAAGGTTATCACCAAGGGAGAGGGAGAGGTGGCCGGTCTAGCGGACCAAAACAAAATACCGTTTCCAATTGA	1482	0.4474	MRINLTQMITLHTSCHTPSSSQSQPSPPPPHSQMALQTATPPTTPSAQVVGNAFVEQYYHILHHSPDLVYRFYQDSSVISRPDSNGVMTSVTTMKGINEKILSLNFKEFKAEIKTADAQKSYKEGVTVLVTGCLTGKDNMRRKFAQSFFLAPQDNGYFVLNDVFRYVEDHEPSELPPVSGDGDASAVTVTPEPEPSVVADSPAPDPANSHVNKGPIVAGNAYDHHERQIPVETEDNVEPHFQSNGNDDSQATEVASLAQEDAPKQSYASIVKVQKGSSVPTKVYVPTNTLKSGPNKNESLVVESVESNEVPEAALDSVNSPESSDAHEEVEGHSIYIRNLPLNVTVGQLEVEFKKFGPIKPGGIQVRNNKQQGYCFGFVEFLSLNSMNNAIQASPIPIGGRQAVVEIKRTTTRVGSGISNTGRPRIPIGRGGLRNDTFRGRGNYGGGRGYGRNDYGSRGGDFSGRGRGHGEGYHQGRGRGGRSSGPKQNTVSN	493

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst1g01427	493	CDD	RRM_SF	335	406	-	-
	Spst1g01427	493	MobiDBLite	consensus disorder prediction	171	210	-	-
	Spst1g01427	493	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	333	410	IPR000504	GO:0003723
	Spst1g01427	493	SUPERFAMILY	RNA-binding domain, RBD	327	409	IPR035979	GO:0003676
	Spst1g01427	493	MobiDBLite	consensus disorder prediction	414	493	-	-
	Spst1g01427	493	Pfam	Nuclear transport factor 2 (NTF2) domain	50	166	IPR002075	-
	Spst1g01427	493	Gene3D	-	303	423	IPR012677	-
	Spst1g01427	493	SMART	rrm1_1	334	406	IPR000504	GO:0003723
	Spst1g01427	493	MobiDBLite	consensus disorder prediction	237	256	-	-
	Spst1g01427	493	MobiDBLite	consensus disorder prediction	14	45	-	-
	Spst1g01427	493	Gene3D	-	39	171	-	-
	Spst1g01427	493	CDD	NTF2	46	168	IPR018222	-
	Spst1g01427	493	ProSiteProfiles	Nuclear transport factor 2 domain profile.	50	166	IPR018222	-
	Spst1g01427	493	PANTHER	RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN	46	467	IPR039539	-
	Spst1g01427	493	MobiDBLite	consensus disorder prediction	237	264	-	-
	Spst1g01427	493	SUPERFAMILY	NTF2-like	46	167	IPR032710	-
	Spst1g01427	493	FunFam	Nuclear transport factor 2 family protein	41	170	-	-
	Spst1g01427	493	FunFam	Ras GTPase-activating protein-binding protein 1	321	453	-	-
	Spst1g01427	493	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	335	393	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst1g01427	Spst-Chr1	17708932	17714987	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst1g01427	K24983		-	gmx:100805494	716.842

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst1g01427	1	17708932	17714987	Spst1g01427	1	17708932	17714987	ECH