Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01426 ATGGGTGGTTGCGTTGTAGGGGCTAATAACTCTATCACCACCCGTCACCTCACTCTGACACACAACCTACGCTTTTTTCACCACATTCACGTTAGCCACGTCACCCTCTCTCTGCAACTTGCTCCTCTCCCAACCGTGCAGGGACACTTACCCACAAACACAGCACAGAGTCACCCCTTCAATTTCACGATTTTCCCAGCAATACCACAATCTCCAATGACCAATTTGCCCCGAGATCTGTTAAGAAGCTTCATGGGAGTGAACCATCATCATAATCACTCTGATAATCGTCACAATTTGCCTGTGTCGGTGGTGAAGTTAGAGGAAGAAGAGGAGTTGGAGCTAAGTCTCGGGCTTTCGATGAACGGTCGCTTTGGGGTGGACCCCACCGCGAAGAAGATAAAGAGAACGACGTCGATTCCAGAGTTCGTAAGGGACGAGGAGATGGGGTACGCTGCTGCGGGGTGCACGGGGCCTCTTGTGAGGACGTGCTCCCTGCCGACGGAGACGGAGGAGGAGTGGAGGAAGAGGAAGGAATTGCAGACTCTGCGCCGCATGGAGGCAAGGAGGAAGCGCTCCGAGAAGCAGAGGAATTTGAAGGCTACGAGAGAACAACAACAACAACAACAAAGGGTTGGGTCTGAAGGTAATAATAACACTGCGGAACAAGGTGCAGGGGCTTACGTTGAGGGTGCACCCTTGGGGAGAACCGTGTCGTTGACCACACGCGTTTGTGGACTCGGTTTGAATGGGGACAGTGAGAAAGAAAAGAAGGAGAAGAGTGGCGTAGTGCTGGCTCCTCCATCACCTTCGCAGGGATCCATTGGTTCTTCGGCAACCTCAGAAGCTGAGTCTCAACAAGGTCAACCAGGAGCGATAGATGTTAGAAGTCCTACTAGTACCAATTTGTTACCAGACCAAGCAAATGTGGTAGGGAACACAGTCAAGAATGCTGCAGCTATAAGAAATCAATCTAATAAACATTTATCACCACATAACAGAACCAAAGACATTGTGAAGAACTTGTTGGAAGACATGCCATGTGTATCGACAAAAGGTGATGGTCCCAATGGAAAGAGAGTAGAAGGTTTTCTTTATCGGTATGGAAAAGGTGAGGAAGTGAGGATAGTGTGTGTTTGTCATGGCAGTTTTCTCACCCCTTCAGAATTTGTTAAGCATGCAGGTGGCGGTGATGTGGCAAACCCATTGAAGCATATTGTTGTTAGTCCGAACTTCTTGTGA 1242 0.4911 MGGCVVGANNSITTRHLTLTHNLRFFHHIHVSHVTLSLQLAPLPTVQGHLPTNTAQSHPFNFTIFPAIPQSPMTNLPRDLLRSFMGVNHHHNHSDNRHNLPVSVVKLEEEEELELSLGLSMNGRFGVDPTAKKIKRTTSIPEFVRDEEMGYAAAGCTGPLVRTCSLPTETEEEWRKRKELQTLRRMEARRKRSEKQRNLKATREQQQQQQRVGSEGNNNTAEQGAGAYVEGAPLGRTVSLTTRVCGLGLNGDSEKEKKEKSGVVLAPPSPSQGSIGSSATSEAESQQGQPGAIDVRSPTSTNLLPDQANVVGNTVKNAAAIRNQSNKHLSPHNRTKDIVKNLLEDMPCVSTKGDGPNGKRVEGFLYRYGKGEEVRIVCVCHGSFLTPSEFVKHAGGGDVANPLKHIVVSPNFL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01426 413 Pfam Putative nuclear localisation signal 160 229 IPR032310 -
Spst1g01426 413 MobiDBLite consensus disorder prediction 267 300 - -
Spst1g01426 413 Pfam Tify domain binding domain 374 408 IPR032308 -
Spst1g01426 413 Pfam Ethylene-responsive binding factor-associated repression 108 142 IPR012463 -
Spst1g01426 413 MobiDBLite consensus disorder prediction 202 223 - -
Spst1g01426 413 MobiDBLite consensus disorder prediction 186 223 - -
Spst1g01426 413 MobiDBLite consensus disorder prediction 248 300 - -
Spst1g01426 413 MobiDBLite consensus disorder prediction 186 201 - -
Spst1g01426 413 Coils Coil 176 205 - -
Spst1g01426 413 PANTHER AFP HOMOLOG 2 77 412 IPR031307 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01426 Spst-Chr1 17702499 17707883 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01426 - - vun:114185130 522.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01426 1 17702499 17707883 Spst1g01426 1 17702499 17707883 ECH