Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01423 CCAGGGTGTTCATCAGTGGCATATGGAGCATCTGAAGAGATTGGGCCATTTCGAATAAACAAAACAGCTTCTGGGCTATACCTTAACAAGTTTTCATGGAACACAGTGGTCAACCTCTTGTTCTTGGAAGCTCCGGCCGGCGTAGGCTTCTCCTACACCAACCGCTCCTCCGACCTCCTCGACACCGGCGATCGCCGCACCGCCCAAGACTCTCTGGAATTTGTTCTCCAATGGCTAAAACGGTTCCCCCGTTACAGAAAAAGGGAACTTTATATCACTGGAGAGAGCTACGCAGGCCATTATGTTCCTCAATTAGCTAAGGAAATCATGAACTATAATGCCAAAAGCAAGCATCCCATCAATCTGAAAGGAATAATGGTAGGAAATGCAGTGACAGACAACTACTATGATAACTTGGGGACAGTGACGTATTGGTGGAGCCATGCTATGATCTCGGATCAGACTTACCGGCAACTGATGAGTACATGTGACTTTCACCGGCAGAAGGAATCTGATGAGTGTGAGTCAGTGTATAGCTATGCCATGGATCAAGAATTCGGTAACATTGATCAGTACAACATCTATGCTCCTCCATGCAACAACTCTGATGGTAGTACCTCTCCCACCCGCCACACCATGCGCTTACCTCACCGACCCCATAAGGCTTTTCGGCATTGGTCTGGTTATGATCCATGTACAGAAAAGTATGCAGAGATTTACTACAACAGGCCTGATGTTCAGAAAGCACTCCACGCTAACACAACTGGGATTCCCTATAGGTGGACTGCTTGCAGTGAGGTTTTGAATCGGAACTGGAATGATACAGATGTATCTGTTCTTCCCATTTATAGAGAGTTGATAGCTCACGGAACAAGAGTTTGGGTGTTCAGTGGAGACGTGGACTCAGTGGTGCCCGTCACAGCAACAAGATATGCTCTTGCACAGCTTAAGTTGTCAACTAAAATACCATGGTATCCTTGGTATGTCAAAAACCAGGTTGGAGGGTGGACAGAGGTGTACGAAGGGGTAACATTTGCAACAGTGAGAGGAGCAGGGCATGAAGTGCCTTTGTTCAAGCCAAGAGCAGCCCTTCAGTTATTCACATCATTCATTGCAGGAAAGCCTCTTCCAAAGTCCTAA 1140 0.4684 PGCSSVAYGASEEIGPFRINKTASGLYLNKFSWNTVVNLLFLEAPAGVGFSYTNRSSDLLDTGDRRTAQDSLEFVLQWLKRFPRYRKRELYITGESYAGHYVPQLAKEIMNYNAKSKHPINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDQTYRQLMSTCDFHRQKESDECESVYSYAMDQEFGNIDQYNIYAPPCNNSDGSTSPTRHTMRLPHRPHKAFRHWSGYDPCTEKYAEIYYNRPDVQKALHANTTGIPYRWTACSEVLNRNWNDTDVSVLPIYRELIAHGTRVWVFSGDVDSVVPVTATRYALAQLKLSTKIPWYPWYVKNQVGGWTEVYEGVTFATVRGAGHEVPLFKPRAALQLFTSFIAGKPLPKS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01423 379 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 1 360 IPR001563 GO:0004185|GO:0006508
Spst1g01423 379 ProSitePatterns Serine carboxypeptidases, serine active site. 92 99 IPR018202 GO:0004185
Spst1g01423 379 FunFam Carboxypeptidase 279 373 - -
Spst1g01423 379 Gene3D - 279 373 - -
Spst1g01423 379 Pfam Serine carboxypeptidase 1 372 IPR001563 GO:0004185|GO:0006508
Spst1g01423 379 Gene3D - 232 269 - -
Spst1g01423 379 FunFam Carboxypeptidase 228 376 - -
Spst1g01423 379 PRINTS Carboxypeptidase C serine protease (S10) family signature 29 41 IPR001563 GO:0004185|GO:0006508
Spst1g01423 379 PRINTS Carboxypeptidase C serine protease (S10) family signature 78 103 IPR001563 GO:0004185|GO:0006508
Spst1g01423 379 PRINTS Carboxypeptidase C serine protease (S10) family signature 343 356 IPR001563 GO:0004185|GO:0006508
Spst1g01423 379 PRINTS Carboxypeptidase C serine protease (S10) family signature 42 52 IPR001563 GO:0004185|GO:0006508
Spst1g01423 379 Gene3D alpha/beta hydrolase 1 201 IPR029058 -
Spst1g01423 379 FunFam Carboxypeptidase 39 201 - -
Spst1g01423 379 ProSitePatterns Serine carboxypeptidases, histidine active site. 343 360 IPR033124 GO:0004185
Spst1g01423 379 SUPERFAMILY alpha/beta-Hydrolases 1 377 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01423 Spst-Chr1 17653131 17656898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01423 237 376 Calmodulin-binding Proteins AT2G22960 31.206 9.00e-16 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01423 K16297 - gmx:100799618 757.288