Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01422 ATGGCTGTAGAGGAGTCCGAGCCTGTGATTGGGGAGTTAGAAAGGGAGGAGAACTTGATTGCTGCAGTAAGGCATATTGTGAAGGCACTAGGGCCAAATAAGACCCTTACCAGTGATGCCAAGAAAATTCTGGCAGATCTTGGCACTAGATTGTCCTCCATGTCGGTCCCTAGTGAGAAGGAGGAGGGGAAACAAGGGCAAGGAGGGGAGGGTGGTGATGATCATGATGGTGTTGCTGCTGGTGATGATGATGATGAGGGTCTTAGTGCAATTGAAGAAAGGCTTAGTATGATTCAGGAGAAAGTTATGAGATGGGAGGAGGATCAGTCCATGATTTGGGATTTGGGACCTGAAGAAGCATCTGAGTATCTGAATGCTGCTAATGAAGCTCGCAGGTTGATTGAGAAGTTGGAAAGTTTGCATTTGAAGAAAGAGGATCAAGAGTACGAGTTTATGCAGAGGGCTTATAGTGTTCTTCAAACAGCTATGGCACGCCTTGAAGAAGAATTCAGGAACTTGCTTATCCAGAACAGGCAACCTTTTGAGCCTGAATATGTCTCTTTTAGGTCCAGTGAGGAAGATGCTGTTGATGAGAACTCCATAATCTCCGTAGGTGATGAGTCAGTTGAGGAATCACTTCAAAGAGATAGTGTCAGCAGAGCCTCTGAGGAGCATATCATTGATTTGGTTCATCCAGCCGTGATCCCGGATCTCAGGTGTATTGCAAACTTGCTTTTTGCTTCTAATTATTGCCAGGAATGTTCCAATGCTTATATTATTGTGCGGAGGGATGCCCTAGATGAGTGCCTCTTCATTCTTGAAATGGAAAGGCTCAGCATCGAGGACGTCTTGAAAATGCAGTGGGCTACTTTGAATTCCAAAATCAAAAGATGGATTTGGGCAGTGAAAATCTTTGTTAGGGTGTATCTTGCAAGTGAGAGGTGGCTTAGTGATCAGATTTTTGGGGAGGGTGAGCGTGTTAGTCTAGCTTGTTTTGTTGATGCATCTAAGGCTTCAATATTGCAGCTTCTGAATTTCGGTGAAGCCATGTCCATTGGTCCTCACCAACCTGAGAAATTGTTCCGTGTTCTTGACATGTATGAGGTTCTTCAAGACCTTATGCCAGACATTGATGCTTTGTACTCAGGTGAGGTTGGTTCCTCGGTTAAAATTGAATGTCATGATGTTCTGAAGAGATTAGGCGATTGTGTGAGGGCAACATTTTTTGAATTTGAAAATGCCATTGCAACAAATGCATCATCAACCCCTTTTGTAGGTGGTGGGATACATCCTTTAACCAAATATGTTATGAATTATCTTAGAACCCTTACAGACTACAGTGACATACTCAATCTACTTCTGAAGGACCAAGAAGAAGATGAATCCATTTCACTGTCACCTGACATGAGCCCTGGTACAGAAGAAGATAGCAGAAGCCAGGGGTCTCCAAGTAGAGTTTCCTCAATGGCCCTTCACTTCCGATCAATCGCATCGATCTTGGAAAGCAACCTTGAGGATAAGTCCAAGTTATACAAAGACGTCTCTTTGCAGCACTTGTTCTTGATGAACAACCTACATTATATGGCTGAAAAGGTTAAGGGGTCTGAACTCAGGCTCATATATGGAGATGAATGGATTCGAAAGCGCAACTGGAAGTTTCAGCAGCATGCAATGAAATATGAGAGGACTAGTTGGAGTCCCATTCTTCACATGCTTAAGGATGAAGGAATTCATGTTCCGGGTACAAATTTGGTCTCAAAAAGTCTTCTTAAAGAGAGGCTACGAAGCTTCTATCTTGGCTTTGAGGATGTTTACAGGATCCAGACAGCTTGGCTTATCCCAGATATTCAGCTTCGCGAAGATTTGCGGATTTCTATATCTCTAAAAGTAATCCAAGCTTATAGAACGTTTGTTGGGAGGCACAGCAATCACATAAGTGACAGAATCATTAAGTACACTGCTGATGATTTAGAAAACTACCTTTTGGATTTCTTTGAAGGATCTCAAAAGTTGTTGCAAAATCCTCATAGAAGGTGA 2037 0.4286 MAVEESEPVIGELEREENLIAAVRHIVKALGPNKTLTSDAKKILADLGTRLSSMSVPSEKEEGKQGQGGEGGDDHDGVAAGDDDDEGLSAIEERLSMIQEKVMRWEEDQSMIWDLGPEEASEYLNAANEARRLIEKLESLHLKKEDQEYEFMQRAYSVLQTAMARLEEEFRNLLIQNRQPFEPEYVSFRSSEEDAVDENSIISVGDESVEESLQRDSVSRASEEHIIDLVHPAVIPDLRCIANLLFASNYCQECSNAYIIVRRDALDECLFILEMERLSIEDVLKMQWATLNSKIKRWIWAVKIFVRVYLASERWLSDQIFGEGERVSLACFVDASKASILQLLNFGEAMSIGPHQPEKLFRVLDMYEVLQDLMPDIDALYSGEVGSSVKIECHDVLKRLGDCVRATFFEFENAIATNASSTPFVGGGIHPLTKYVMNYLRTLTDYSDILNLLLKDQEEDESISLSPDMSPGTEEDSRSQGSPSRVSSMALHFRSIASILESNLEDKSKLYKDVSLQHLFLMNNLHYMAEKVKGSELRLIYGDEWIRKRNWKFQQHAMKYERTSWSPILHMLKDEGIHVPGTNLVSKSLLKERLRSFYLGFEDVYRIQTAWLIPDIQLREDLRISISLKVIQAYRTFVGRHSNHISDRIIKYTADDLENYLLDFFEGSQKLLQNPHRR 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01422 678 MobiDBLite consensus disorder prediction 462 485 - -
Spst1g01422 678 Pfam Exo70 exocyst complex subunit 296 662 IPR046364 GO:0000145|GO:0005546|GO:0006887
Spst1g01422 678 PANTHER EXOCYST COMPLEX PROTEIN EXO70 87 667 IPR004140 GO:0000145|GO:0006887
Spst1g01422 678 SUPERFAMILY Cullin repeat-like 108 666 IPR016159 -
Spst1g01422 678 MobiDBLite consensus disorder prediction 52 85 - -
Spst1g01422 678 Coils Coil 88 108 - -
Spst1g01422 678 MobiDBLite consensus disorder prediction 464 485 - -
Spst1g01422 678 Gene3D Exocyst complex component Exo70 101 673 - -
Spst1g01422 678 Coils Coil 120 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01422 Spst-Chr1 17647849 17649885 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01422 12 678 EXO70 exocyst subunit family AT3G29400 48.676 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01422 K07195 - gmx:100799102 1201.42