Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01421 ATGGAAGGATCATCATCAAGAGTGAGGAAAGGGGCATGGAGTAGATATGAAGATGAACTTCTGAAAGCTTGTGTGCAGATTCATGGAGAAGGAAACTGGCATCTTGTTCCTGAAAGAGCAGGGTTGAAGAGATGCAGGAAGAGTTGTAGACTGAGATGGTTGAACTATTTGAAACCGAACATCAAACGAGGAAATTTTAGTGAAGATGAGGTTGATTTGATGATCAGATTGCATAAGCTTCTGGGAAACAGCATCTGGCATGAAAATGTATGGTTGACTTCAAATGTCTCAATTCCATGCAATTCCATCAGCTAG 315 0.4095 MEGSSSRVRKGAWSRYEDELLKACVQIHGEGNWHLVPERAGLKRCRKSCRLRWLNYLKPNIKRGNFSEDEVDLMIRLHKLLGNSIWHENVWLTSNVSIPCNSIS 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01421 104 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Spst1g01421 104 SMART sant 9 59 IPR001005 -
Spst1g01421 104 SUPERFAMILY Homeodomain-like 11 84 IPR009057 -
Spst1g01421 104 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 61 IPR017930 -
Spst1g01421 104 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 83 - -
Spst1g01421 104 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Spst1g01421 104 CDD SANT 12 57 IPR001005 -
Spst1g01421 104 Gene3D - 10 62 - -
Spst1g01421 104 FunFam Myb transcription factor 10 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01421 Spst-Chr1 17644741 17647308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01421 1 83 MYB Transcription Factor Family AT1G66370 65.060 1.24e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst1g01421 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01421 - K09422 pvu:PHAVU_008G038400g 158.688