Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst1g01420 | ATGGAAGGAACATCATCAGGTGTGAGGAAAGGAGCATGGAGTCAAACTGAAGATGACCTTCTCAGAGATTGTGTGCAACTTCATGGAGAAGGAAAATGGCACCTTGTTCCTCATAGATCAGGGTTGAACAGGTGCAGGAAGAGTTGTAGATTGAGATGGTTGAACTATTTGAAACCAGACATCAAACGAGGAAATTTTAGTGAAGATGAGGTTGATTTGATGATCAGATTGCATAAACTTTTGGGAAACAGATGGTCTCTGATTGCAGGAAGACTTCCTGGAAGAACTTCAAACGATGTGAAGAATTTCTGGAACACCAACCTGCGACGCAAAGTACTCTGTCACAACAAAGTCAACAACAAGGAAAATGTAAAAGAATCCGAAACCACTAGGAAAACCCACCAAGTGATAAAGCCTGTGCCTCGAGCTTTGCCAAAAGCATGGCCTTTGCTGCAAGGAAAATTCATGAGTAGTTCCAAAGTTGGTGTTGGTGAAGCAGTTTCATCATCAGGACATGAGAATTGGTGGGAAACTTTGTTAGATGAGAAAGAAGAAAATATTAACAACAGCACATGCTTCCCTGGTGGAAATTTTGAGTTTTGGGATGAAGAACTTAATTTTATGGCTTCTGACTTTCCTACAGAAGGTGAAACTTTGAGCGATTTTCTTCTTAATTAA | 678 | 0.4041 | MEGTSSGVRKGAWSQTEDDLLRDCVQLHGEGKWHLVPHRSGLNRCRKSCRLRWLNYLKPDIKRGNFSEDEVDLMIRLHKLLGNRWSLIAGRLPGRTSNDVKNFWNTNLRRKVLCHNKVNNKENVKESETTRKTHQVIKPVPRALPKAWPLLQGKFMSSSKVGVGEAVSSSGHENWWETLLDEKEENINNSTCFPGGNFEFWDEELNFMASDFPTEGETLSDFLLN | 225 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst1g01420 | 225 | CDD | SANT | 65 | 108 | IPR001005 | - | |
Spst1g01420 | 225 | ProSiteProfiles | Myb-like domain profile. | 5 | 57 | IPR001005 | - | |
Spst1g01420 | 225 | SMART | sant | 9 | 59 | IPR001005 | - | |
Spst1g01420 | 225 | SMART | sant | 62 | 110 | IPR001005 | - | |
Spst1g01420 | 225 | PANTHER | TRANSCRIPTION FACTOR MYB8-RELATED-RELATED | 5 | 133 | - | - | |
Spst1g01420 | 225 | CDD | SANT | 12 | 57 | IPR001005 | - | |
Spst1g01420 | 225 | ProSiteProfiles | Myb-like domain profile. | 58 | 108 | IPR001005 | - | |
Spst1g01420 | 225 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 62 | 112 | IPR017930 | - | |
Spst1g01420 | 225 | Pfam | Myb-like DNA-binding domain | 10 | 57 | IPR001005 | - | |
Spst1g01420 | 225 | Pfam | Myb-like DNA-binding domain | 63 | 108 | IPR001005 | - | |
Spst1g01420 | 225 | SUPERFAMILY | Homeodomain-like | 7 | 104 | IPR009057 | - | |
Spst1g01420 | 225 | FunFam | Transcription factor MYB113 | 65 | 136 | - | - | |
Spst1g01420 | 225 | Gene3D | - | 3 | 62 | - | - | |
Spst1g01420 | 225 | Gene3D | - | 64 | 139 | - | - | |
Spst1g01420 | 225 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 5 | 61 | IPR017930 | - | |
Spst1g01420 | 225 | FunFam | Myb transcription factor | 10 | 62 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst1g01420 | Spst-Chr1 | 17635743 | 17636888 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst1g01420 | 1 | 144 | MYB Transcription Factor Family | AT1G66370 | 60.544 | 1.52e-58 | 183 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB | Spst1g01420 | Myb_DNA-binding | 1.2e-15 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst1g01420 | - | K16166 | pvu:PHAVU_008G038600g | 347.051 |