Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01420 ATGGAAGGAACATCATCAGGTGTGAGGAAAGGAGCATGGAGTCAAACTGAAGATGACCTTCTCAGAGATTGTGTGCAACTTCATGGAGAAGGAAAATGGCACCTTGTTCCTCATAGATCAGGGTTGAACAGGTGCAGGAAGAGTTGTAGATTGAGATGGTTGAACTATTTGAAACCAGACATCAAACGAGGAAATTTTAGTGAAGATGAGGTTGATTTGATGATCAGATTGCATAAACTTTTGGGAAACAGATGGTCTCTGATTGCAGGAAGACTTCCTGGAAGAACTTCAAACGATGTGAAGAATTTCTGGAACACCAACCTGCGACGCAAAGTACTCTGTCACAACAAAGTCAACAACAAGGAAAATGTAAAAGAATCCGAAACCACTAGGAAAACCCACCAAGTGATAAAGCCTGTGCCTCGAGCTTTGCCAAAAGCATGGCCTTTGCTGCAAGGAAAATTCATGAGTAGTTCCAAAGTTGGTGTTGGTGAAGCAGTTTCATCATCAGGACATGAGAATTGGTGGGAAACTTTGTTAGATGAGAAAGAAGAAAATATTAACAACAGCACATGCTTCCCTGGTGGAAATTTTGAGTTTTGGGATGAAGAACTTAATTTTATGGCTTCTGACTTTCCTACAGAAGGTGAAACTTTGAGCGATTTTCTTCTTAATTAA 678 0.4041 MEGTSSGVRKGAWSQTEDDLLRDCVQLHGEGKWHLVPHRSGLNRCRKSCRLRWLNYLKPDIKRGNFSEDEVDLMIRLHKLLGNRWSLIAGRLPGRTSNDVKNFWNTNLRRKVLCHNKVNNKENVKESETTRKTHQVIKPVPRALPKAWPLLQGKFMSSSKVGVGEAVSSSGHENWWETLLDEKEENINNSTCFPGGNFEFWDEELNFMASDFPTEGETLSDFLLN 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01420 225 CDD SANT 65 108 IPR001005 -
Spst1g01420 225 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Spst1g01420 225 SMART sant 9 59 IPR001005 -
Spst1g01420 225 SMART sant 62 110 IPR001005 -
Spst1g01420 225 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 133 - -
Spst1g01420 225 CDD SANT 12 57 IPR001005 -
Spst1g01420 225 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Spst1g01420 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 112 IPR017930 -
Spst1g01420 225 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Spst1g01420 225 Pfam Myb-like DNA-binding domain 63 108 IPR001005 -
Spst1g01420 225 SUPERFAMILY Homeodomain-like 7 104 IPR009057 -
Spst1g01420 225 FunFam Transcription factor MYB113 65 136 - -
Spst1g01420 225 Gene3D - 3 62 - -
Spst1g01420 225 Gene3D - 64 139 - -
Spst1g01420 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 61 IPR017930 -
Spst1g01420 225 FunFam Myb transcription factor 10 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01420 Spst-Chr1 17635743 17636888 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01420 1 144 MYB Transcription Factor Family AT1G66370 60.544 1.52e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst1g01420 Myb_DNA-binding 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01420 - K16166 pvu:PHAVU_008G038600g 347.051