Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01412 ATGGCAGCATTCATATTCACGGTTTCACAGGACGGAACCGCTGATTTCCTAACGGTGCAGGAGGCGATCGACGCCGTGCCGCTCGGAAACATTCGCCGGACGGTCATTCGGGTCTCGCCGGGAATCTACCAGCAACCGGTGTACATCCCCAAGACCAAGAATTTCATCACTCTCGCTGCTCTGGCCCCAGAGGGCACTGTGCTTACCTGGAACAACACTGCAACCGGAATCAATCATCATCAACCTGCTAGGATTATAGGGACTGGAACGTTTGGTTGTGGAAGTACCATTGTGGAAGGGGAGGACTTCATTGCTGAGAATATTACTTTTGAGAATTCTGCCCCTCAGGGTTCAGGGCAAGCAGTTGCAATTAGAGTAACAGCAGATCGATGTGCCTTCTACAATTGTAGGTTCCTTGGATGGCAGGACACATTGTACTTACATTACGGTAAACAGTATTTGAAAGATTGTTACATTGAAGGAAGTGTGGACTTCATCTTTGGCAATAGCACCGCTCTTTTGGAGCACTGTCACATCCACTGCAAGTCTGAGGGCTTCATAACTGCACAAAGCAGAAAATCATCACAGGAAACTACTGGTTATGTATTCTTAAGATGCGTTATCACGGGTAATGGAGGAAATTCGTATGCATATCTTGGACGACCGTGGGGTCCTTTTGGAAGGGTTGTCTTTGCATACACTTACATGGATCAGTGTATAAGACATGTTGGATGGGATAACTGGGGGAAAATGGAGAATGAGAGAAGTGCTTGCTTTTATGAATACAGGTGTTTTGGACCTGGTTGCTGTCCATCCAAGCGAGTAACATGGTGTAGAGAATTGTTGAATGAAGAAGCTATGCAGTTCCTCTCACATCCTTTCATCGATCCAGAACCAGAGAAACCTTGGCTTGCTCAAAGGATGGCCCTCAGAATTCCATATTCTGCTTGA 951 0.4658 MAAFIFTVSQDGTADFLTVQEAIDAVPLGNIRRTVIRVSPGIYQQPVYIPKTKNFITLAALAPEGTVLTWNNTATGINHHQPARIIGTGTFGCGSTIVEGEDFIAENITFENSAPQGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSEGFITAQSRKSSQETTGYVFLRCVITGNGGNSYAYLGRPWGPFGRVVFAYTYMDQCIRHVGWDNWGKMENERSACFYEYRCFGPGCCPSKRVTWCRELLNEEAMQFLSHPFIDPEPEKPWLAQRMALRIPYSA 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01412 316 Pfam Pectinesterase 7 296 IPR000070 GO:0030599|GO:0042545
Spst1g01412 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 6 298 - -
Spst1g01412 316 FunFam Pectinesterase 2 309 - -
Spst1g01412 316 ProSitePatterns Pectinesterase signature 2. 159 168 IPR033131 -
Spst1g01412 316 Gene3D - 4 310 IPR012334 -
Spst1g01412 316 SUPERFAMILY Pectin lyase-like 2 298 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01412 Spst-Chr1 17575492 17579862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01412 5 309 Carbohydrate Esterase AT5G47500 37.975 2.24e-69 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01412 K01051 - gmx:100786786 644.81