Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01407 ATGGCAAGGAAGAGAAAGGTTTCTGAAGAAGTTGAAGAGAGAAATCCATCTGATGTAGCCATGGCGTGGGATGAGGTGATGAAGGAAGCTGCTGCTCTAGGAAGTGGCAGGAGATTGAGGAAGACATTTGTTGGCGTGAGACAAAGGCCTTCAGGAAGATGGGTAGCTGAGATAAAGGATACCATTCAGAAGATAAGAGTGTGGTTAGGAACTTTTGATACAGCTGAGGAAGCTGCAAGAGCCTATGATGAGGCTGCTTGTCTTCTTCGAGGTGCCAACACTAGAACAAATTTCTGGCCTAGTTCTCAATCTTCCTCAACTCCTGCTCTTCCTTCAAAGATTACCAATCTCCTCCTCCAAAGGCTCAAAGAAAGGAATAATCGTACAAACCCTTGCACTCTTTCTTCATCTTCCTCCTCCATATCTCCTTTTATCGACCAGACACAGAACCAACAAGAAGATGTATGTGGAAGTGTGTCAACATATTTCACATTGGACCAATTCTCAGATTTTCTTAATGACCCTGAAGATTACAGCACAAGTAACAATGAGTTTAGTAATTATAGTGCACAAATTGATTGCATCACAAGTTGTCTTGAATCATGTTTGAATGAAAATGATGATTACAGGGAGAAAGAAAAGGAAATGGAAATGGAATTTGACTTCAAAAGTGTGACACAAACATCAAGTGCTTATATAAATTCAGAAGGGGAAAGAGAGGAAGACGATGAAAAAGACACTGATTTGAATACTCAGGATTTTCAGTTCCTGGACAATGTTGTTCCATCCAGTTACCATTATTCACCTTTTGAGATAGCTGAAGAGATTGAGGAGCAGTTGGAGCCTGAGAACTATGGTGATGAGTCTTCAATGCTTAGAGAAGTCATGAATAGAATGAAATATGAGAGGAAGTTTTCAGCTTCCCTTTATGCCTTCAATGGGATACCTGAATGCTTGAAGTTGAAAGAATCAGGAAACAAAAATGGAAGAGAGGTTTGTATTTCTAATCAGCTAACCAACCTCAAGATGGCTTGCAGCAAAAACAAAATTGAGGCTACTAAGAAGAATGAAGAATGCATAGAAGCAATGGATAGGAAAGAGCCACAAACATCAATTGGCATGGTTTACTCTTCCCCCTCTTTTTCATCCAGTATTGATGATGGAGAACTGTTTCTATGGAATTCACTTGATCATCCTAATATTTGTTTGCTATGTTAA 1218 0.3957 MARKRKVSEEVEERNPSDVAMAWDEVMKEAAALGSGRRLRKTFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPSSQSSSTPALPSKITNLLLQRLKERNNRTNPCTLSSSSSSISPFIDQTQNQQEDVCGSVSTYFTLDQFSDFLNDPEDYSTSNNEFSNYSAQIDCITSCLESCLNENDDYREKEKEMEMEFDFKSVTQTSSAYINSEGEREEDDEKDTDLNTQDFQFLDNVVPSSYHYSPFEIAEEIEEQLEPENYGDESSMLREVMNRMKYERKFSASLYAFNGIPECLKLKESGNKNGREVCISNQLTNLKMACSKNKIEATKKNEECIEAMDRKEPQTSIGMVYSSPSFSSSIDDGELFLWNSLDHPNICLLC 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01407 405 FunFam ethylene-responsive transcription factor RAP2-11 41 100 - -
Spst1g01407 405 CDD AP2 43 98 IPR001471 GO:0003700|GO:0006355
Spst1g01407 405 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Spst1g01407 405 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Spst1g01407 405 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
Spst1g01407 405 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Spst1g01407 405 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 25 306 - -
Spst1g01407 405 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Spst1g01407 405 Pfam AP2 domain 43 91 IPR001471 GO:0003700|GO:0006355
Spst1g01407 405 Coils Coil 199 219 - -
Spst1g01407 405 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01407 Spst-Chr1 17549927 17551144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01407 40 118 AP2-EREBP Transcription Factor Family AT5G19790 72.152 1.76e-31 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst1g01407 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01407 K09286 - gmx:100796159 597.045