Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01406 ATGGATGGAGGAGTTGGACAAGATAGTGGTGCAGGCATGGAGATGTTTATAACAAATTATAAATTGGGAAAAACACTTGCCTTTGTATCCATGTTGGGCAAGAAGAAAATTGCAGAACATGTGTTCACTGGGAAGAAGGTTATCATCCACATCCTTAAACGTGGCAAGATAAAGAACATGGAAATGGAAGAACAAGAAATTGAAATTTTAAGATTGCTCAACCATCCTCGCATTATAAAACTTTACGAGGTCATAGAAACTCCAACTCACATATGTGTTGTTATGGAGCATGCATCTACAGAGCTTTTTGATTACATAATAGAGAGGGGTAGGGTAGAAGAAGATCAAGCTCGAAATTTTTTTCAGCAGATAATTTCTGGAGTGGAGCATTGTCACAGCAACATGGTGGTTCATAGAGATTTGAGACCTGAAAACATACTTCTGGACATCAAAGTCGGTGTCAAGATTTCTGGATTTGGCTTGAGCAACATCATGCATGCTGGTCACTTTCTGAACACAAGTTATGGAAGCTCTAACTATGTAGCTCCTGAGGTTATATGTGGAAAACTGTGTATTGGACCTGAAGTTGATGTATGGAGTTGTGGTGTAGTTTTATATTTTCTTCTCTGTGGAGTTCTACCTTTTGATGATGAAAATATTCCAAATCTCTTCAACAAAATAAAGGGAGGGGTTTTCAGTTTTCCATGTTACCTATCTGATGGAGCTAGAGACTTGATATCAAAGATGCTTAATAGTGCTCCTAAGGTTTGGCCGCAGAATGGATCAATGAGGCACATAGGGTTGCTTTTATGCTGGGTGTCTGGTGCTTCTTTTGGTAATTGTGGAACACAATGCCAGTTGTTTGAAATGGTGGAATTGATTATATGTCCACCTCAGGACTTCTACAGGAAAGTATTTTACAGGTCAATATTGGAGCTTGAGACCCTCATTAGCTGGGTGTGGGACATGAAGCTCCTATTTAAAGCTGATGCTCTATTCCCTAACATCCTGGGTTTCAAAAGTGCACTTTCCTCTATGTTAACTCGTATCATTATAGGGAATCAATTTGAAGTAGATGCTCTACTTCGTTCAGTGAGGTGTCTGCATTTTGTCACCTGTTGTCAGAAGGAGTTTCGACCCCGTAGCACCTTAAGGGTGTCCTTCACCTTTGGGAATTCAAATCCGTGTGCATTTGGCTCCATCATTGGTGGGATCTGGCAGATGCATGCGATGCAGCCTTACCCTCCCACAGTGCTGTGGTTGCCTCTTAAATTGGCTGCCATTGTGCTGCTTTTGTGGCAGAAACTGCATGGATTGTGGCAGGATAGAGTGTGTCAAGATTTAGAAATGGATGGACCAGCTGGTCGAGGTGGTGCTGGCCTGGACATGTTTCTACCAAATTATAAAATGGGAAAAACTCTTGGGATTGGATCTTTTGGCAAGGTGAAAATTGCAGAACATGTATTGACTGGTCATAAGGTTGCGATCAAGATCCTTAATCGACGCAAGATAAAGAGCATGGAAATGGAAGAAAAAGTGAGACGAGAAATTAAAATTTTAAGATTATTCATGCATCCTCACATTATACGACTATATGAAGTCATAGAAACTCCAACAGACATATATGTTGTTATGGAGTATGTGAAATCTGGAGAGCTCTTTGATTACATAGTTGAGAAGGGTAGGTTGCAGGAAGATGAAGCTCGTAATTTTTTTCAACAGATAATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGATTTGAAGCCTGAGAATTTACTTTTGGACTCCAAATGTAATGTCAAGATTGCTGATTTTGGCTTGAGCAACATCATGCGTGATGGTCACTTTCTCAAGACCAGTTGTGGAAGCCCTAACTATGCTGCTCCTGAGGTTATCTCTGGGAAATTGTATGCTGGACCTGAAGTGGATGTCTGGAGCTGTGGTGTAATTTTATATGCTCTTCTTTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCAAACCTCTTCAAGAAAATAAAGGGTGGGATATACACCCTTCCCAGTCATCTATCACCTGGTGCTAGGGATTTGATACCAGGGATGCTTGTGGTTGATCCTATGAGGAGAATGACCATACCTGAGATCCGTCAACACCCATGGTTTCAAGCTCGACTTCCGCGTTATTTAGCTGTGCCACCACCAGATACATTGCAACAAGCCAAAAAGATTGATGAGGAGATCCTTCAAGAAGTGGTGAAGATGGGATTTGACAGGAATCAATTGGTTGAATCTCTTCGGAACAGAATACAAAATGAGGGTACTGTGGCATACTATTTGTTATTGGACAACCGATTCCGTGTTTCAAGTGGCTATCTTGGAGCTGAGTTTCAAGAGTCCATGGATTCCAGTTTTAACCAAATGCATCCCAGTGAAGTTGCTTCTTCAGTTGTTGGACACCGATTTCCAGGCTATATGGATTATCCAGGTGTAGGGTCCAGGCCACAGTTCCCTGTCGAAAGAAAATGGGCCCTTGGGCTTCAGTCTCGAGCCCATCCTCGCGAAATAATGACTGAGGTCCTTAAAGCTTTGCAAGAATTAAATGTTTGTTGGAAGAAGATTGGACATTACAACATGAAGTGCAGGTGGGTTGCTACCATTCCTGGTCGTCACGAAGGAATGGTTAACAATAATGTGCATAGTAACCATTATTTTGGAGATGATTCCAACATTATTGAGAACGATGCTGTTTCTACTTCAAACGTGGTCAAATTTGAAGTGCAGCTTTACAAAACTCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTACAGGGTCCACAGTTTCTTTTCTTGGATCTGTGTGCTGCTTTCCTTGCACAGCTTCGTGTCCTCTAG 2892 0.416 MDGGVGQDSGAGMEMFITNYKLGKTLAFVSMLGKKKIAEHVFTGKKVIIHILKRGKIKNMEMEEQEIEILRLLNHPRIIKLYEVIETPTHICVVMEHASTELFDYIIERGRVEEDQARNFFQQIISGVEHCHSNMVVHRDLRPENILLDIKVGVKISGFGLSNIMHAGHFLNTSYGSSNYVAPEVICGKLCIGPEVDVWSCGVVLYFLLCGVLPFDDENIPNLFNKIKGGVFSFPCYLSDGARDLISKMLNSAPKVWPQNGSMRHIGLLLCWVSGASFGNCGTQCQLFEMVELIICPPQDFYRKVFYRSILELETLISWVWDMKLLFKADALFPNILGFKSALSSMLTRIIIGNQFEVDALLRSVRCLHFVTCCQKEFRPRSTLRVSFTFGNSNPCAFGSIIGGIWQMHAMQPYPPTVLWLPLKLAAIVLLLWQKLHGLWQDRVCQDLEMDGPAGRGGAGLDMFLPNYKMGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKSMEMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPGMLVVDPMRRMTIPEIRQHPWFQARLPRYLAVPPPDTLQQAKKIDEEILQEVVKMGFDRNQLVESLRNRIQNEGTVAYYLLLDNRFRVSSGYLGAEFQESMDSSFNQMHPSEVASSVVGHRFPGYMDYPGVGSRPQFPVERKWALGLQSRAHPREIMTEVLKALQELNVCWKKIGHYNMKCRWVATIPGRHEGMVNNNVHSNHYFGDDSNIIENDAVSTSNVVKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01406 963 SMART uba_6 743 780 IPR015940 -
Spst1g01406 963 CDD AMPKA_C 838 960 - -
Spst1g01406 963 ProSiteProfiles Protein kinase domain profile. 16 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01406 963 SUPERFAMILY KA1-like 777 962 IPR028375 -
Spst1g01406 963 FunFam Non-specific serine/threonine protein kinase 844 961 - -
Spst1g01406 963 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 741 781 IPR015940 -
Spst1g01406 963 FunFam Non-specific serine/threonine protein kinase 459 798 - -
Spst1g01406 963 Pfam Kinase associated domain 1 920 962 IPR001772 -
Spst1g01406 963 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 466 759 - -
Spst1g01406 963 SMART tyrkin_6 468 720 IPR020635 GO:0004713|GO:0006468
Spst1g01406 963 ProSitePatterns Tyrosine protein kinases specific active-site signature. 136 148 IPR008266 GO:0004672|GO:0006468
Spst1g01406 963 Gene3D Transferase(Phosphotransferase) domain 1 460 801 - -
Spst1g01406 963 Gene3D Transferase(Phosphotransferase) domain 1 12 265 - -
Spst1g01406 963 SUPERFAMILY Protein kinase-like (PK-like) 37 259 IPR011009 -
Spst1g01406 963 ProSitePatterns Protein kinases ATP-binding region signature. 474 497 IPR017441 GO:0005524
Spst1g01406 963 SMART serkin_6 20 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01406 963 SMART serkin_6 468 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01406 963 FunFam Maternal embryonic leucine zipper kinase 12 273 - -
Spst1g01406 963 Pfam Protein kinase domain 468 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01406 963 Pfam Protein kinase domain 40 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01406 963 Pfam UBA/TS-N domain 742 778 IPR015940 -
Spst1g01406 963 ProSiteProfiles Protein kinase domain profile. 468 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01406 963 SUPERFAMILY Protein kinase-like (PK-like) 465 736 IPR011009 -
Spst1g01406 963 FunFam Non-specific serine/threonine protein kinase 461 547 - -
Spst1g01406 963 ProSitePatterns Serine/Threonine protein kinases active-site signature. 587 599 IPR008271 GO:0004672|GO:0006468
Spst1g01406 963 CDD STKc_AMPK_alpha 465 720 - -
Spst1g01406 963 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 914 962 IPR001772 -
Spst1g01406 963 Gene3D Kinase associated domain 1, KA1 844 961 - -
Spst1g01406 963 CDD UBA_SnRK1_plant 742 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01406 Spst-Chr1 17538435 17548712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01406 468 720 CBL-interacting serine-threonine protein kinases AT4G24400 51.969 1.68e-87 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Spst1g01406 Pkinase 9.8e-80 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01406 K07198 - gmx:100796687 1016.14