Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01404 ATGGGCTGTGCGAGCTCGAAGAAAGCGGTTGCCGGAGGCGGTTTCACGCCGCCTGGGCCGCTCGAGGTGCGTTCGAGCTCGCGGAGGCTGCGCAATGGAAAGTTGCGAAACGGCGTCGTGGAGGCGCGTGAGGGGGACGCGAGATCGGAGGAGGTGAAGGAGGGGAAGAAGGGGAGCTTGAGATGTTCGGTGTCGTTGAGGTTTTCGGGTAGGTTTGTGGAGGCTGAGCAAAATGCTGCTGGGTGGCCACCTTGGCTTACCTCTGTTGCCGGTGAAGCCATTCAAGGGTGGGTCCCTCTCAAAACCGATTCTTTTGAGAGATTGGATAAGATTGGACAAGGTACATATAGCAATGTATTCAAAGCACGTGAAGTTGAAACTGGGAGGATGGTTGCCCTGAAGAAGGTGCGTTTTGACAAATTTCACGCCGAGAGCATTAGGTTCATGGCGAGAGAAGTAATAATTCTTCGTGCACTTGACCACCCAAACATCATGAAATTGGAGGGTATAATTACTTCACAACAATCGAACAGCATATATTTTGTATTTGAATACATGGAGCATGACCTTGCTGGCTTATTAGCTTCTCCTGATATAAAGTTCAGTGAGCCACAGATAGCAGATTTTGGATTAGCAAATACCATTTGTCCAGATAGTAAGCAATCCCTAACAAGTCGAGTGGTGACTCTATGGTATCGTCCTCCTGAGCTCTTGATGGGATCAACAAATTATGGAGCTTCGGTGGATCTATGGAGTGTGGGCTGTGTATTTGCTGAACTTTTTCTGGGGAAGCCCATCCTTAAGGCCAGAACTGAGGTTGAACAATTACACAAAATTCTCAGGCTTTGTGGGTCTCCACCTGATGAGTACTGGAAAAAGTGTAAGCTTCCTCTGGCCGCAATGTTTAAGCCTCAGATTAATTACGAAAGCTGCCTTAGAGAGAGGTGTAGAGATTTTCCTGTAACTGCTGTAAACCTAATTGAGACTTTACTTTCCATTGATCCCTCCAAGCGTGGGACTGCCTCCTCTGCACTCAAGTCTGAGTATTTCACCACCAAGCCATATGCTTGTGATCCATCACTCCTGCCAAAGTATCCACCAAGCAAAGAAATGGATGCCAAAAATCGGGAAGAAAGCAGGAAAAAGAATGGAGGTAAGGGGAGAGAGGCTGTAACTTCAAGGAGGCATAGACGAGTCCACAAAGTTGCCCATGACCATATCAATTTCTCCAAGTCAGCTTTGAAAGAGGAAATGCAGAATATTTCTCAAATTGCTGGTACAGATGATGGTTGGCCAACTGTTGCAAAAGTTAATAAAGAGCAACCAAAGCCTTCATGTGATGCAAAGTCAGAGGCTGCACAACTGGTGAATGGTTGCAATGGATACGGTGTACACTCTGGACCAGGACCAGCACCAGTATCAGCATCCAGTGGCTTTACATGGGCTAAAAGAAGAAAACCAGAAGCTTCATTCATATCGTCTGATGGATCAAGAAGCAAAATCAGTGGTCTGGATCCAACTTTTGCAAAAGGCACATATGATTTAACAAAACATGGGATAGAAGTTTCAGAAAGGAAACATATTTTCAACACAAGGAATCAGGATAGGACTTCCAACTATGTATTGCCAAAATACCATGCTCCTCGCATCCAACAAAAGTCATTCGATTTAGCTGATACATGCGACTCAAATTATTACATGGAATTTGATTTCATAGATAAATTGGATGCTCTGTTGGATCAGGACCACAGAAAAAATGGTGAGCCTGTGAAGCAGTCAGCACCAAAAATGATTGCATCAAATAAAAATTATGAGTTCTTGCATTAG 1827 0.4499 MGCASSKKAVAGGGFTPPGPLEVRSSSRRLRNGKLRNGVVEAREGDARSEEVKEGKKGSLRCSVSLRFSGRFVEAEQNAAGWPPWLTSVAGEAIQGWVPLKTDSFERLDKIGQGTYSNVFKAREVETGRMVALKKVRFDKFHAESIRFMAREVIILRALDHPNIMKLEGIITSQQSNSIYFVFEYMEHDLAGLLASPDIKFSEPQIADFGLANTICPDSKQSLTSRVVTLWYRPPELLMGSTNYGASVDLWSVGCVFAELFLGKPILKARTEVEQLHKILRLCGSPPDEYWKKCKLPLAAMFKPQINYESCLRERCRDFPVTAVNLIETLLSIDPSKRGTASSALKSEYFTTKPYACDPSLLPKYPPSKEMDAKNREESRKKNGGKGREAVTSRRHRRVHKVAHDHINFSKSALKEEMQNISQIAGTDDGWPTVAKVNKEQPKPSCDAKSEAAQLVNGCNGYGVHSGPGPAPVSASSGFTWAKRRKPEASFISSDGSRSKISGLDPTFAKGTYDLTKHGIEVSERKHIFNTRNQDRTSNYVLPKYHAPRIQQKSFDLADTCDSNYYMEFDFIDKLDALLDQDHRKNGEPVKQSAPKMIASNKNYEFLH 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01404 608 Gene3D Transferase(Phosphotransferase) domain 1 204 374 - -
Spst1g01404 608 MobiDBLite consensus disorder prediction 1 54 - -
Spst1g01404 608 MobiDBLite consensus disorder prediction 360 399 - -
Spst1g01404 608 ProSitePatterns Protein kinases ATP-binding region signature. 111 134 IPR017441 GO:0005524
Spst1g01404 608 FunFam probable serine/threonine-protein kinase At1g54610 92 187 - -
Spst1g01404 608 MobiDBLite consensus disorder prediction 34 54 - -
Spst1g01404 608 Pfam Protein kinase domain 204 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01404 608 Pfam Protein kinase domain 105 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01404 608 ProSiteProfiles Protein kinase domain profile. 105 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01404 608 SUPERFAMILY Protein kinase-like (PK-like) 99 356 IPR011009 -
Spst1g01404 608 PANTHER CELL DIVISION PROTEIN KINASE 103 196 - -
Spst1g01404 608 MobiDBLite consensus disorder prediction 369 390 - -
Spst1g01404 608 Gene3D Phosphorylase Kinase; domain 1 100 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01404 Spst-Chr1 17503544 17508607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01404 97 383 Core Cell Cycle Gene Families AT5G10270 39.589 1.29e-77 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Spst1g01404 Pkinase 4e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01404 - - vum:124825561 935.25