Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01403 ATGTCCACTCCCAACGCCGATTCCGGCACGGCGCCGCCTCCGCGCCCCACAATCACCCTCCCTCCGCGTCCCTCCGCCGAGGCCTTTTTCTCTGCCGTCGGCGGCGCCAGTCCCGGTCCCATGACCCTCGTCTCCAGCTTCTTTGGCTCCGACGCCGCTGCTGACTGCCGCTCCTTCTCCCAGCTCCTCGCCGGCGCCATGGCCTCCCCCATGGCCTTCTCCGCTGCCGACAACTCCGGCAAGGACGATGATGGGCCTCACAAGGGCTTCAAGCAGAGCAGACCCATGAATTTGGTCATTGCTCGTTCCCCTGTCTTTACTGTCCCACCCGGGTTGAGCCCTTCTGGGTTTCTTAACTCCCCTGGCTTCTTTTCCCCTCAGAGCCCTTTTGGGATGTCCCACCAACAGGCTTTAGCACAGGTTACAGCTCAAGCTGTCCTAGCACAATCTCATATGCACATGCAAGCTGATTACCAGATGCATGCAGTAACAGCTCCTACTGAACCACCAGTACAACAGCCGTCTTTTGCTGTAAATGAAGCTTCAGAGCAGCAAATAGTTTCATCTGTATCAGAAGCTAAAATTGCTCAATTGGAACCGTCGGATTTCTCGCAGACTGATAAGAAATATCAGCCGAATTCCCAGATCATTGACAAACCTGTAGATGATGGCTACAACTGGCGTAAGTATGGGCAGAAGCAGGTTAAGGGCAGCGAGTATCCACGAAGCTACTACAAATGTACACATCTGAATTGCCTTGTGAAGAAAAAAGTTGAGCGTGCCCATGATGGTCACATAACTGAAATTATCTATAAAGGTCAGCATAACCATGAAAAGCCTCAGGCAAATAGACGTGTCAAGGATAACAGTGATTCAAATGGAAGTGCAATTGTTCAGCCTAAGTCTGAGTCAAACTCACAAGGTTGGGTTGGACAACAAGTAAACAAGTTTAGTGAAAACATTCCCGATTCTTCAGTCCCTGAAAGTGACCAGACCTCCAATCAAGGGGCTCCTAGGCAACTACTACCTGGGTCAAGTGAGAGTGAGGAAGTGGGTGATGTAGATAATAGGGAAGAGGCAGATGACAGTGAGCCAAACCCTAAGAGAAGGAATACTGATCTTGCAGTTTCTGAAGTACCTCTGTCTCAGAAGACTGTCACAGAACCCAAAATTATTGTTCAAACAAGAAGCGAAGTTGATCTTTTGGATGATGGCTACAGGTGGAGAAAGTATGGTCAAAAAGTGGTGAAGGGAAATCCTCATCCTAGGAGTTATTACAAATGCACTAGTGCAGGATGCAACGTGCGTAAGCATGTTGAGAGAGCTTCAACCGACCCCAAAGCTGTCATAACCACGTATGAGGGTAAGCACAATCATGATGTGCCTGCTGCTAGAAATAGCAGCCACAACACAGTTAGCAGCAATTCAATGCCATTAAAACCGCACAGTGTCGTTCCAGAGAAGCATCCTTTGCTTAAAGATATGGATTTTGGAAGTAATGACCAAAGACCTGTACATTTGCGCCTAAAAGAAGAACAAATCATAGTATAA 1551 0.4855 MSTPNADSGTAPPPRPTITLPPRPSAEAFFSAVGGASPGPMTLVSSFFGSDAAADCRSFSQLLAGAMASPMAFSAADNSGKDDDGPHKGFKQSRPMNLVIARSPVFTVPPGLSPSGFLNSPGFFSPQSPFGMSHQQALAQVTAQAVLAQSHMHMQADYQMHAVTAPTEPPVQQPSFAVNEASEQQIVSSVSEAKIAQLEPSDFSQTDKKYQPNSQIIDKPVDDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCLVKKKVERAHDGHITEIIYKGQHNHEKPQANRRVKDNSDSNGSAIVQPKSESNSQGWVGQQVNKFSENIPDSSVPESDQTSNQGAPRQLLPGSSESEEVGDVDNREEADDSEPNPKRRNTDLAVSEVPLSQKTVTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHDVPAARNSSHNTVSSNSMPLKPHSVVPEKHPLLKDMDFGSNDQRPVHLRLKEEQIIV 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01403 516 MobiDBLite consensus disorder prediction 270 286 - -
Spst1g01403 516 MobiDBLite consensus disorder prediction 270 382 - -
Spst1g01403 516 SUPERFAMILY WRKY DNA-binding domain 394 462 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst1g01403 516 MobiDBLite consensus disorder prediction 198 217 - -
Spst1g01403 516 MobiDBLite consensus disorder prediction 461 481 - -
Spst1g01403 516 Gene3D WRKY domain 207 281 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst1g01403 516 Gene3D WRKY domain 387 463 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst1g01403 516 SMART WRKY_cls 221 279 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g01403 516 SMART WRKY_cls 402 461 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g01403 516 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 119 475 IPR044810 GO:0003700
Spst1g01403 516 FunFam WRKY transcription factor 33 389 455 - -
Spst1g01403 516 Pfam WRKY DNA -binding domain 222 278 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g01403 516 Pfam WRKY DNA -binding domain 403 459 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g01403 516 MobiDBLite consensus disorder prediction 464 480 - -
Spst1g01403 516 SUPERFAMILY WRKY DNA-binding domain 219 280 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst1g01403 516 ProSiteProfiles WRKY domain profile. 397 462 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g01403 516 MobiDBLite consensus disorder prediction 287 342 - -
Spst1g01403 516 MobiDBLite consensus disorder prediction 198 213 - -
Spst1g01403 516 MobiDBLite consensus disorder prediction 1 25 - -
Spst1g01403 516 FunFam WRKY transcription factor 210 281 - -
Spst1g01403 516 ProSiteProfiles WRKY domain profile. 222 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01403 Spst-Chr1 17496725 17500964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01403 15 514 WRKY Transcription Factor Family AT2G03340 51.215 9.30e-148 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst1g01403 WRKY 1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01403 - - gmx:100796679 949.118