Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01399 ATGGGATCGTGTTCCTCAGAGAAAGGGAGCCATGTTTTGGTGGAAAGAGACGACACTGAAACCACCCTCATTGCCATGGTGCTGGGTTCCAACGTGGTGTTTCCCGCAGCTCTCAACGCTGCAATTGAGCTCAACGTGTTTGAGATAATTGCGAAGGAAAGTTCAGCAGAGAGTGGTGGGTTCATGTCATCCTCTGAAATCGCTTCCAAGTTATTAATACCAACACAGCAGCAGCAACATCACGATGAGTTGCCGAATAGGTTGGAGCGTTTGTTGCGATTGCTTGCTAGCTACTCTCTTCTCATTGTTTCCACTCGCAGCGATGGAGATGGTGGCAGCGTGAGAGTTTATGGGGTGTCAGCATCGGGTAAATACTTCGTGCGTGATGAAAATGGTAGGGGTTATCTCGCTTCTTTCACATCGTTTCTGTGTCACCCTGCACTATCCAGGGTGTGGGTGAACTTTAAGGAAGCGGTTATTGATCCTGAGATTGACCTATTCAAGAAGGTTCATGGAATGTCCAAGTTCGAATACTTTGGGAAAAATCCTGAAATAAACCAAGTATTTAACAAAGCAATGTATGATATTTGCACCACCCACATGAAAAGAATACTTGAAGTATACACAGGATACGAGGGTATATCAACTTTGGTTGATGTAGGAGGTGGAACTGGACAGTGTCTCAAAATGATCATTTCCAAATACCCTTCAATTAATGGAATTAATTTTGACCTCCCACATGTAATTGAAAACTCACCACCCATTCCAGGGGTTGAGCATGTCGGGGGGAATATGTTTGAAGGTATACCACAGGGTGATGCCATCATGCTAAAGGCTATATGCCATAATTGGTCCGATGAAAAAGCCATAGAACTTTTGAGAAATTGTCACAAAGCTTTGCCACCAAAAGGGAAGGTCATTGTTGGGGATTTCATACTGCCAGAAGACCCACAACCTACAAATGATCATAAAGTGATTGCAATTCTTGATAACATCATGTTTATTACTCCAGGTGGAACGGAAAGAACTGAGAAACAATTTGAGAGTTTGGGCATGCGTGCTGGATTTTCTGGGTTTCAAGTTGTCTGTCGTGCTTTCTCTACTTTGTCAGTGATGGAATTTTACAAATAA 1131 0.4315 MGSCSSEKGSHVLVERDDTETTLIAMVLGSNVVFPAALNAAIELNVFEIIAKESSAESGGFMSSSEIASKLLIPTQQQQHHDELPNRLERLLRLLASYSLLIVSTRSDGDGGSVRVYGVSASGKYFVRDENGRGYLASFTSFLCHPALSRVWVNFKEAVIDPEIDLFKKVHGMSKFEYFGKNPEINQVFNKAMYDICTTHMKRILEVYTGYEGISTLVDVGGGTGQCLKMIISKYPSINGINFDLPHVIENSPPIPGVEHVGGNMFEGIPQGDAIMLKAICHNWSDEKAIELLRNCHKALPPKGKVIVGDFILPEDPQPTNDHKVIAILDNIMFITPGGTERTEKQFESLGMRAGFSGFQVVCRAFSTLSVMEFYK 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01399 376 Pfam O-methyltransferase domain 152 357 IPR001077 GO:0008171
Spst1g01399 376 FunFam Caffeic acid O-methyltransferase 130 376 - -
Spst1g01399 376 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 26 376 IPR016461 GO:0008168
Spst1g01399 376 CDD AdoMet_MTases 216 313 - -
Spst1g01399 376 Gene3D - 2 126 IPR036388 -
Spst1g01399 376 PIRSF O-mtase 3 376 IPR016461 GO:0008168
Spst1g01399 376 PANTHER O-METHYLTRANSFERASE 26 366 IPR016461 GO:0008168
Spst1g01399 376 Pfam Dimerisation domain 37 96 IPR012967 GO:0046983
Spst1g01399 376 SUPERFAMILY "Winged helix" DNA-binding domain 18 130 IPR036390 -
Spst1g01399 376 Gene3D Vaccinia Virus protein VP39 129 376 IPR029063 -
Spst1g01399 376 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 135 374 IPR029063 -
Spst1g01399 376 FunFam Caffeic acid 3-O-methyltransferase 4 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01399 Spst-Chr1 17480386 17482683 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01399 14 376 Monolignol Biosynthesis Gene Families AT5G54160 47.527 5.00e-111 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01399 - - gmx:100798295 599.742