Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst1g01397 | ATGCTTATAGCTGGTTATGATCTTGACATGTCATATATCACAGATCGAGTATTAGCAATGTCATTTCCTTCACAACGTATGCGAGCAATGTATCGAAATCCTCTCTGGCAGGTTAAATCTGTATTGGACATGAGACATTATGATCATTATAAGATCTATAATCTCTGCATAGAAGAAAGTTATGATCCAGCTCACTTCCATGGACGCGTGGAACCATACCCCTTTGATGATAACCATGTGCCATCTCTTGAAATGATAAGAGCTTTCTGTGAAAGTGTAGATTCATGGCTGGCAAGTGACCCCAAAAATATTGCTGTTATTCATTGCATGGCAGGAAAAGGTAGAACTGGATTAATGGTGTGTGCATACCTAACTTATTGCGGCATGACAGCAGATGAGGCTCTTCAACTGTATGCAGATAGACGAACAACCAATAATGAAGGAGTATCAATACCAAGTCAACGTCGTTATGTGGCATATTGGGACACTCTTCTTTCCAATTCTGTTCCTAGGGGAACTGGAATTGGACCACCAAAGGTGAACTTGCCTCAACCATGTAGCAGAGAATTGCGACGAATCCGGCTTTATGATGCAATCAACATTGACACTATATTCTTTGTTATCTCAGAGTTACATGAGGTTCCTAACGAGGTGTATCGTCCCCCAGTGGAAGTTTATCGTAGCAGCTGTAGACAGGTAAAGAAAGGGTATCAAAGAAACAGCAGCCCTCGCTATTATATCTCTATTCTTGAAGATGATAGAGATGGAAAACAATCAGAAACAGAAGAACCTCGCATTGTAGTTCAAATGGACACAGAGAGTCCTGCTATATACCAGAAATCATGTTTGGACCATTACTTTGATAAACCTATACAAGTAACTGGAGATGTACGTGTCATATTCTATGAGAAAATGATAGGAGGTCGCCTTTTCTACTGCTGTTTTAATACAGCTTTTATTAGGAACAGCTTACTACAGCTCACAATACAAGAGCTGGACAAAGTTGGGAAGAAGGGAAAATCAATATGTGGCCCTGACTTCTGCCTAGAATTATTGTTTGGTCCTGCTAATACAGGATATTCATCATCAAGTATATCCAATGATGAACATTGTAGTGATAATTCTTTATAA | 1131 | 0.3952 | MLIAGYDLDMSYITDRVLAMSFPSQRMRAMYRNPLWQVKSVLDMRHYDHYKIYNLCIEESYDPAHFHGRVEPYPFDDNHVPSLEMIRAFCESVDSWLASDPKNIAVIHCMAGKGRTGLMVCAYLTYCGMTADEALQLYADRRTTNNEGVSIPSQRRYVAYWDTLLSNSVPRGTGIGPPKVNLPQPCSRELRRIRLYDAINIDTIFFVISELHEVPNEVYRPPVEVYRSSCRQVKKGYQRNSSPRYYISILEDDRDGKQSETEEPRIVVQMDTESPAIYQKSCLDHYFDKPIQVTGDVRVIFYEKMIGGRLFYCCFNTAFIRNSLLQLTIQELDKVGKKGKSICGPDFCLELLFGPANTGYSSSSISNDEHCSDNSL | 376 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst1g01397 | 376 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 87 | 142 | IPR000387 | GO:0016311|GO:0016791 | |
| Spst1g01397 | 376 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 1 | 168 | IPR029023 | - | |
| Spst1g01397 | 376 | Gene3D | - | 226 | 358 | - | - | |
| Spst1g01397 | 376 | ProSiteProfiles | C2 tensin-type domain profile. | 201 | 356 | IPR014020 | - | |
| Spst1g01397 | 376 | SMART | PTEN_C2_2 | 183 | 355 | IPR014020 | - | |
| Spst1g01397 | 376 | CDD | PTP_PTEN | 9 | 164 | IPR045101 | GO:0016791 | |
| Spst1g01397 | 376 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 107 | 117 | IPR016130 | GO:0016311|GO:0016791 | |
| Spst1g01397 | 376 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 259 | 355 | IPR035892 | - | |
| Spst1g01397 | 376 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 5 | 168 | IPR029021 | - | |
| Spst1g01397 | 376 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 5 | 365 | - | - | |
| Spst1g01397 | 376 | Pfam | C2 domain of PTEN tumour-suppressor protein | 266 | 353 | IPR014020 | - | |
| Spst1g01397 | 376 | Gene3D | Protein tyrosine phosphatase superfamily | 3 | 172 | IPR029021 | - | |
| Spst1g01397 | 376 | Pfam | Tyrosine phosphatase family | 97 | 139 | IPR026893 | GO:0004721 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Spst1g01397 | Spst-Chr1 | 17456885 | 17460292 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Spst1g01397 | 1 | 360 | Protein tyrosine phosphatase (PTP) family | AT5G39400 | 69.890 | 0.0 | 535 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Spst1g01397 | K01110 | - | gmx:100809938 | 720.309 |