Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01396 ATGCCCAACACCTTCTCCTCTCTCCTCTGGTGGATTGGTAAAAAGTTGCGTAGAAGGAACACAGTTAGTAATGGAGACAGTGGCAACGATAACGACAACGTTAATGTTGTCGGTGCGGCAGTTGTGGATGATAATCCATTTGGCAGCACGGTGGAATGTTACGCTTGCACGCAGGTAGGCGTGCCGGTGTTTCACTCCACCAGCTGCGACAGTTTTAACCAGCCGCAATGGGAGGCTTCGGCCGGGTCCTCTCTCGTTCCGATCCAGAACCGTCCCAATAAGGTTCTCGGCTTTCGAGCTGTGTCCGGGTCGAATGTTGGACCTTTTGGACGGGTTTTAGATCCGCGGAGCAAGCGCGTGCAGAAATGGAACCGGGCGCTGCTGCTGGCGCGTGGGGTGGCGTTGGCGATAGACCCGCTGTTCTTCTACGCGCTGTCGATCGGGAGGGAGGGGTCGCCGTGTCTGTACATGGACGGCGGCCTGGCGGCGATGGTGACGGTGGCGCGGACGTGCGTGGACGCGGTGCACCTCTTGCACGTGTGGCTGCAGTTCAGGCTGGCGTACGTGTCGCGCGAGTCGCTGGTGGTGGGGTGCGGGAAACTGGTGTGGGACGCGCGCGAGATCGCGTCGCATTACCTGCGATCGATGAAGGGATTCTGGTTCGACGCATTCGTGATTCTCCCCGTTCCCCAGGCTGTGTTTTGGTTGATAGTGCCAAAATTGATAAGAGAAGAGCAAATTAAAATCATTATGACCATAATGCTATTGATTTTTTTGTTCCAATTTCTCCCCAAGGTTTACCATAGCATCTGCATGATGAGAAGAATGCAAAAAGTCACAGGCTACATCTTTGGTACCATTTGGTGGGGCTTTGGTCTCAATCTCATTGCTTATTTTATTGCTTCCCATGTTGCTGGAGGCTGCTGGTATGTCCTTGCAATTCAACGAGTTGCATCATGCCTTCGGCAGCAGTGTGAGAGAACTAACGGATGCAATCTTTCTGTGTCATGCTCAGAGGAGGTATGCTACCAGTCTTTGTCAAGTGCAATCGGAAATTCATGCGGTGGAAACTCAACAGTGGTGTTAAGAAAGCCTTGGTGCTTAGATGTCGAAGGACCTTTCAAATATGGGATCTACCAATGGGCACTTCCAGTCATATCAAGCAACTCATTGGCTGTAAAGATTCTTTATCCCATTTTTTGGGGTTTGATGACCCTCAGCACTTTCGGAAATGATCTTGAACCCACAAGTGACTGGCTAGAAGTTATTTTCAGTATATGCATTGTACTCAGTGGACTTTTGCTCTTTACATTATTGATTGGTAACATTCAGGTATTCTTACATGCTGTCATGTCAAAGAAGAGAAAGATGCAACTGAGATGTCGAGATATGGAATGGTGGATGAGGAGGAGGCAGTTGCCATCACGATTAAGACAAAGAGTTCGCCATTTTGAACGACAGAGATGGGCTGCGATGGGAGGAGAAGATGAGATGGAAATGATCAAAGATTTGCCTGAGGGGCTGAGGAGGGACATCAAGCGCTATCTTTGCCTCGACCTCATTAGAAAGGTTCCTTTGTTCCACAACTTGGATAACCTTATTCTTGACAACATCTGTGACAGGGTGAAGCCCCTAGTCTTCTCTAAAGATGAGAAGATAATCAGAGAAGGTGATCCTGTACCAAGGATGGTGTTCATAGTCCGAGGACGCATAAAACGCAACCAAAGTTTGAGCAAAGGCATGGTAGCCTCAAGCATCCTTGAGCCTGGAGGGTTTTTGGGCGACGAGCTACTATCATGGTGCCTTCGCCGGCCGTTTATAGATAGACTTCCGGCCTCCTCAGCGACATTTGTGTGTCTTGAATCAGCAGAAGCCTTTGGCCTTGATGCAGATCACTTGAGGTACATCACTGATCACTTCAGGTACAAGTTTGCCAATGAGAGGCTGAAGAGAACAGCAAGATATTACTCATCCAATTGGAGAACCTGGGCTGCTGTCAACATTCAATTTGCTTGGAGACGTTACAGGCAGAGGACTAGAGGTCCAGTGACCCCTGTAAGGGACATTGGAGGCACTGAGCGCAGGCTCTTGCAATATGCTGCAATGTTCATGTCAATAAGGCCACATGACCATCTTGAATGA 2142 0.493 MPNTFSSLLWWIGKKLRRRNTVSNGDSGNDNDNVNVVGAAVVDDNPFGSTVECYACTQVGVPVFHSTSCDSFNQPQWEASAGSSLVPIQNRPNKVLGFRAVSGSNVGPFGRVLDPRSKRVQKWNRALLLARGVALAIDPLFFYALSIGREGSPCLYMDGGLAAMVTVARTCVDAVHLLHVWLQFRLAYVSRESLVVGCGKLVWDAREIASHYLRSMKGFWFDAFVILPVPQAVFWLIVPKLIREEQIKIIMTIMLLIFLFQFLPKVYHSICMMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCLRQQCERTNGCNLSVSCSEEVCYQSLSSAIGNSCGGNSTVVLRKPWCLDVEGPFKYGIYQWALPVISSNSLAVKILYPIFWGLMTLSTFGNDLEPTSDWLEVIFSICIVLSGLLLFTLLIGNIQVFLHAVMSKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHFERQRWAAMGGEDEMEMIKDLPEGLRRDIKRYLCLDLIRKVPLFHNLDNLILDNICDRVKPLVFSKDEKIIREGDPVPRMVFIVRGRIKRNQSLSKGMVASSILEPGGFLGDELLSWCLRRPFIDRLPASSATFVCLESAEAFGLDADHLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRQRTRGPVTPVRDIGGTERRLLQYAAMFMSIRPHDHLE 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01396 713 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 104 679 - -
Spst1g01396 713 CDD CAP_ED 526 636 IPR000595 -
Spst1g01396 713 SMART cnmp_10 526 652 IPR000595 -
Spst1g01396 713 SUPERFAMILY cAMP-binding domain-like 452 640 IPR018490 -
Spst1g01396 713 SUPERFAMILY Voltage-gated potassium channels 114 447 - -
Spst1g01396 713 Gene3D Helix hairpin bin 452 517 - -
Spst1g01396 713 Gene3D Jelly Rolls 524 642 IPR014710 -
Spst1g01396 713 ProSiteProfiles cAMP/cGMP binding motif profile. 526 636 IPR000595 -
Spst1g01396 713 Gene3D - 154 449 - -
Spst1g01396 713 Pfam Ion transport protein 123 444 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01396 Spst-Chr1 17448524 17453967 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01396 9 713 Ion Channels AT5G15410 76.487 0.0 1049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01396 K05391 - gmx:100798823 1301.96