Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01382 ATGATATGTGGTTATTGTATAGAAGGCAATTTAAGTTTGGCTTTTAAGTTTTTCCATAGGATGAGTGGCCATGATTGTGTTCCAGATTCTATTACATATGGTGCTCTTATAAGTGGGTTGTACAAACAGTCAAAGTTGAATGAGGCTCTTGGATTGTATGATGCCATGATAGAGAAGGGACTTACTCCATGTGAAGTTACTCGAGTAACGTTGGCTCATGAATATTGCAAGATAGGTGACAGTTTCTCTACTATGATTGTTCTTGAAAGGCTAGAAAAGAAACCCTGGATCCAGACAGTTAACACTCTGCTTCAATTCCTCCAACTCCATGCCACTGAAACTCACTTAGCCATGGAATACGGCAATTGGGCTGAATCGCTGCAAACCGAAACCCCACTTCTCTCTTTCCCCCAGCCTTCAGCATCGTATCCTCCTCCACCATCTCACACTACCCATTACCCCTCTTACCCTCAAAACCCTAATCCCTCTTCCTCTCTTCCCCTCAACCCTCCTGGGGTTGATTCCCTCCCCCCATTGAAGCCCGTTATATATTCGGGTCACGAAGCCGTTCCTATTCCCAGTTTGATCTATCCTCAGACCCATGTTGGGGCTGATTCCAACTCGTTGGCGCCGTCTTCTGGGTACTATGTGAACCAGAATCGGGCTGCCAGAGAGGCTGTTAGGCAATTTGGTTCTGACCCGACTGTCTTTGCTCCTGGCATATCTATACCATCCAATGGCTCAGAACAATTGGCTACGGTAGATCCTATCTCCATGTGGTGGGCAAATACCGCAACTCAACTTCAAGGCAGTGGCGTACTGAACAAAAAACAAAAGAAAGCTAAAACTAAGGTTGTGCAACCTGCATATTGTGAAGTTTGCAAGATAGAATGCACCGGCAAGGAAGTACTGGACCAACATAAATTAGGAAAGAAGCACAAGAAGAACTTGGAAAAACTAAGAGAATCATTGAAACCAACCCACTTTCAACCATCTGGGTCAACTAATCCGGTTATAGGACCCCAATTACAGGACGACAAGAGCAAATTAACCACTGGGAACAAGACTAAGAGAAAAAAAGTTGAAACTGTTGCAGACTTGGAGAAAAAGAAAAAGAAGGTTCTTGATGGTGGGGCTGCAGCCGAAGCAGTTAAGATATGTGCTATATGTAACGTGGTGTGTAATAGTGAGACAGTCTATAATTTCCATCTTACTGGACAAAAGCATGCTGCTATGCTGAAGAAAGCATCTTATCATACATACTCCAATGCCAGTTGA 1278 0.439 MICGYCIEGNLSLAFKFFHRMSGHDCVPDSITYGALISGLYKQSKLNEALGLYDAMIEKGLTPCEVTRVTLAHEYCKIGDSFSTMIVLERLEKKPWIQTVNTLLQFLQLHATETHLAMEYGNWAESLQTETPLLSFPQPSASYPPPPSHTTHYPSYPQNPNPSSSLPLNPPGVDSLPPLKPVIYSGHEAVPIPSLIYPQTHVGADSNSLAPSSGYYVNQNRAAREAVRQFGSDPTVFAPGISIPSNGSEQLATVDPISMWWANTATQLQGSGVLNKKQKKAKTKVVQPAYCEVCKIECTGKEVLDQHKLGKKHKKNLEKLRESLKPTHFQPSGSTNPVIGPQLQDDKSKLTTGNKTKRKKVETVADLEKKKKKVLDGGAAAEAVKICAICNVVCNSETVYNFHLTGQKHAAMLKKASYHTYSNAS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01382 425 PANTHER ZINC FINGER PROTEIN 385B-LIKE 139 417 - -
Spst1g01382 425 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 29 63 IPR002885 -
Spst1g01382 425 MobiDBLite consensus disorder prediction 324 360 - -
Spst1g01382 425 Pfam Zinc-finger of C2H2 type 290 313 - -
Spst1g01382 425 Pfam Zinc-finger of C2H2 type 386 409 - -
Spst1g01382 425 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1 28 IPR002885 -
Spst1g01382 425 SMART ZnF_U1_5 286 320 IPR003604 GO:0003676|GO:0008270
Spst1g01382 425 SMART ZnF_U1_5 382 416 IPR003604 GO:0003676|GO:0008270
Spst1g01382 425 Pfam PPR repeat family 1 42 IPR002885 -
Spst1g01382 425 Gene3D Classic Zinc Finger 273 320 - -
Spst1g01382 425 Gene3D Classic Zinc Finger 355 416 - -
Spst1g01382 425 MobiDBLite consensus disorder prediction 138 153 - -
Spst1g01382 425 NCBIfam pentatricopeptide repeat 31 63 IPR002885 -
Spst1g01382 425 NCBIfam pentatricopeptide repeat 1 30 IPR002885 -
Spst1g01382 425 Gene3D Tetratricopeptide repeat domain 1 132 IPR011990 GO:0005515
Spst1g01382 425 MobiDBLite consensus disorder prediction 327 349 - -
Spst1g01382 425 MobiDBLite consensus disorder prediction 134 172 - -
Spst1g01382 425 SUPERFAMILY beta-beta-alpha zinc fingers 283 321 IPR036236 -
Spst1g01382 425 SUPERFAMILY beta-beta-alpha zinc fingers 384 416 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01382 Spst-Chr1 17340226 17347530 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01382 285 416 C2H2 Transcription Factor Family AT5G61190 34.091 3.06e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01382 - - gmx:100814580 373.629