Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01380 ATGTTTTCAATGACACTAGAGGGTGCTTGTGGCTATGGTGATCTCTATCAGCAAGGTTACGGGCTTGAAACCACAGCTCTAAGCACAGCACTGTTCAACAATGGTCTCAGTTGTGGTGCATGTTTTGAGATAAAGTGTGCCAACTCTGAATGGTGCAATCCCAATGCAGGCTCTATCAAAGTAACTGCAACAAATTTCTGTCCACCAAATTACGCCCCACCAAATTTGGACCACTGGTGCAACCCTCCACAGAAACACTTCGACTTGTCCATGAAAATGTTCACCACAATTGCCATGTACAAAGCAGGGATCATCCCAGTGAAGTATCGTCGAGTGGCATGCACCAAAACTGGGGGAGTGAAGTTCCAAATGGGAGGGAACCCTTATTGGCTTCAAGTTTTGTTGTACAACGTTGGCAATGGTGGTGGTGTTTGTGAAGTGAGGATCAGAGGGTCAAACAGTAATGAGTGGAAATCCATGAACAGGGTTTGGGGACAGAATTGGGTGAATGGAGAGAATTTGGTGGGGCAAGCCTTGTCCTTTCAGGTGAGAACCAGCGATGGAAAAATGTTGGAGTTTGATGACGTTGCACCTTCCTATTGGCAATTTGGGCAGAGCTATGAGGGCAAAACAAATTTCTAG 642 0.4595 MFSMTLEGACGYGDLYQQGYGLETTALSTALFNNGLSCGACFEIKCANSEWCNPNAGSIKVTATNFCPPNYAPPNLDHWCNPPQKHFDLSMKMFTTIAMYKAGIIPVKYRRVACTKTGGVKFQMGGNPYWLQVLLYNVGNGGGVCEVRIRGSNSNEWKSMNRVWGQNWVNGENLVGQALSFQVRTSDGKMLEFDDVAPSYWQFGQSYEGKTNF 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01380 213 SUPERFAMILY PHL pollen allergen 116 209 IPR036749 -
Spst1g01380 213 Gene3D - 117 213 IPR036749 -
Spst1g01380 213 PANTHER EXPANSIN-A15 4 210 IPR002963 GO:0009664
Spst1g01380 213 SUPERFAMILY Barwin-like endoglucanases 5 137 IPR036908 -
Spst1g01380 213 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 7 119 IPR007112 -
Spst1g01380 213 CDD DPBB_EXPA_N 3 114 - -
Spst1g01380 213 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 129 209 IPR007117 -
Spst1g01380 213 Pfam Expansin C-terminal domain 120 198 IPR007117 -
Spst1g01380 213 PRINTS Expansin/Lol pI family signature 28 46 IPR007118 GO:0005576
Spst1g01380 213 PRINTS Expansin/Lol pI family signature 6 24 IPR007118 GO:0005576
Spst1g01380 213 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Spst1g01380 213 PRINTS Expansin/Lol pI family signature 102 118 IPR007118 GO:0005576
Spst1g01380 213 PRINTS Expansin/Lol pI family signature 157 171 IPR007118 GO:0005576
Spst1g01380 213 Pfam Lytic transglycolase 24 109 IPR009009 -
Spst1g01380 213 PRINTS Expansin signature 19 33 IPR002963 GO:0009664
Spst1g01380 213 PRINTS Expansin signature 166 187 IPR002963 GO:0009664
Spst1g01380 213 PRINTS Expansin signature 94 107 IPR002963 GO:0009664
Spst1g01380 213 PRINTS Expansin signature 59 69 IPR002963 GO:0009664
Spst1g01380 213 PRINTS Expansin signature 45 56 IPR002963 GO:0009664
Spst1g01380 213 PRINTS Expansin signature 77 94 IPR002963 GO:0009664
Spst1g01380 213 PRINTS Expansin signature 118 130 IPR002963 GO:0009664
Spst1g01380 213 PRINTS Expansin signature 130 151 IPR002963 GO:0009664
Spst1g01380 213 PRINTS Expansin signature 195 211 IPR002963 GO:0009664
Spst1g01380 213 Gene3D - 2 115 IPR036908 -
Spst1g01380 213 SMART dpbb_1 24 109 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01380 Spst-Chr1 17324139 17324780 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01380 5 213 Expansin Gene Family AT5G39280 58.095 2.28e-89 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01380 - - gmx:100799337 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00217 4 2419755 2421195 Spst1g01380 1 17324139 17324780 PCT