Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01362 ATGGCGTTCTTAAATAAAATTGGAAATCTACTCAAGAATTCTGCTGTCAAGCACATGAATCAAGATTTTTCTGTGTCTAGCCCTTCACTTTGGCAAGCAATTAGATCCATGTCATCTGCAAAGCTTTTTGTCGGAGGAATTTCTTATAGCACTGATGATATGAGTCTGCGGGAAGCTTTTGCTCGCTATGGAGAAGTAATTGATGTCAATGTTATTATGGATCGTGAAACTGGCAGATCAAGAGGTTTTGCCTTCATAACCTTTGCAACAAGTGAGGATGCATCTTCTGCCATTCAGGCCTTGGATGGCCAGGATCTTCATGGTCGGAGAATTCGGGTGAATTATGCTACAGAAAGATCACGACCAGGGTTTGGTGGCGGTGGTGGATATGGTGGAGGTGGGTATGGGGGTGGTGGTGGTGGATATGGTGGAGGTGGTGGTTATGGAGGTAATGCCAACAGGGGTGGAAGCTATGGAGGTGGTGGTCATGGTGTTACAAGCAGCTATGGCGGTGGCAATGCTGAAACTAGTTACACTGGTGGTGCTGATGCTAGTAATTACCAATTCGGTGGAAATTCTGGTGGAGATCTTGGCCCAGCTAGCGGTGAATTCGGAAGCAACCAATGTGATGGAGCAGGCGCAGCCGACATTGATGAATTCATAGAGCCACAGGAAGACAAGGTGAGGGGAAACAGTGATGAACCTGATGGCTATGCTCAGAGCAAGTAA 729 0.4678 MAFLNKIGNLLKNSAVKHMNQDFSVSSPSLWQAIRSMSSAKLFVGGISYSTDDMSLREAFARYGEVIDVNVIMDRETGRSRGFAFITFATSEDASSAIQALDGQDLHGRRIRVNYATERSRPGFGGGGGYGGGGYGGGGGGYGGGGGYGGNANRGGSYGGGGHGVTSSYGGGNAETSYTGGADASNYQFGGNSGGDLGPASGEFGSNQCDGAGAADIDEFIEPQEDKVRGNSDEPDGYAQSK 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01362 242 MobiDBLite consensus disorder prediction 193 242 - -
Spst1g01362 242 SUPERFAMILY RNA-binding domain, RBD 21 150 IPR035979 GO:0003676
Spst1g01362 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Spst1g01362 242 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 173 - -
Spst1g01362 242 Gene3D - 16 195 IPR012677 -
Spst1g01362 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Spst1g01362 242 PRINTS Eggshell protein signature 36 52 - -
Spst1g01362 242 PRINTS Eggshell protein signature 190 208 - -
Spst1g01362 242 PRINTS Eggshell protein signature 125 140 - -
Spst1g01362 242 PRINTS Eggshell protein signature 154 164 - -
Spst1g01362 242 SMART rrm1_1 41 114 IPR000504 GO:0003723
Spst1g01362 242 CDD RRM2_NsCP33_like 41 116 - -
Spst1g01362 242 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 36 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01362 Spst-Chr1 17083516 17085488 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01362 29 119 Eukaryotic Initiation Factors Gene Family AT1G49760 31.868 2.43e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01362 K12741 - gmx:100807155 312.768