Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01361 ATGGATTCGGGAATGATTGTTTTCAGCATCATTAATAGAAGCAATTCGAGAAATGGGAGGAAAGAAAGTAGTGAACTTGAGCTCTTACCAGCCTTGACAAGCACTGTGGTGGTTCTGTTCTCTTCTCTTCTTCTGAGGTGGTCTCTGATTGCAGGAAGACTTCCTGGAAGAACTTCAAATGATGTGAAGAATTACTGGAGCACCTATACACGACGTAAATTACAATCTCACAACAAAGATAACAACGTAAAGCAGCATGACACAGAATCAACATTGAAACCTCATGAAGTTATAAAGCCTTTACCTAGAGCTTTATCAAAAACATGCCCCAAGTTGCAGGAGAAATCTATAAATAGTTTCAAAGTTGGTGTTAGTGAAGAAGGTGCAATATCTTCATCAGGGTCTGGGAATTGGTGGGAAACTCTGTTAGATGAGAAGGAAGAGAATATTGCAGTTAACAAAAAGACATGTTTCCTTGGTGGGGAAGATGGAGTGTTTGAGCTTTGGGATGAAGAGCTTGGTTCAGTAGCTTCTGACTTTCTTACAGAAGGATTGAAGAGATGCAGGAAGAGTTGTAGATTGAGATGGTTGAACTATTTAAAACCAAATATCAAACGAGGAGATTTTAGTGAGGATGAGGTTGATTTGATTATCAGATTGCATAAGCTTTTGGGAAACAGGTGGTCTCTGATTGCAGGAAGGCTTCCTGGAAGAACTTCAAACGATGTGAAGAATTACTGGAGCACCTACACACGACGTAAATTACAGTCTCACAACAAAGATAACAACGTAAAACAGCATGACACAGAATCAACATTGAAACCCCATGAAGTTATAAAGCCTTTACCTCAAGCTTTATCAAAAACATGTCCCAAGTTATTGCAGGAGAAATCTATAAATAGTTTCAAAGATGGTGTTGGTGAAGGTGCAACTTCTTCATCAGGGTCTGGGAATTGGTGGGAAACTTTGTTAGATGAAAAGGAAGGAAATATTGCAGTTAACAACAAGACATGCTTCTTTGGTGGGGAAAATGGAGTGTTTATGCTTCGGGATGAAGAACTTGGTTCAATTGCTTCTGACTTTTTTACAGAAGGTGAAACTTGGAGCACTTTTTTCTTGACCTAG 1125 0.392 MDSGMIVFSIINRSNSRNGRKESSELELLPALTSTVVVLFSSLLLRWSLIAGRLPGRTSNDVKNYWSTYTRRKLQSHNKDNNVKQHDTESTLKPHEVIKPLPRALSKTCPKLQEKSINSFKVGVSEEGAISSSGSGNWWETLLDEKEENIAVNKKTCFLGGEDGVFELWDEELGSVASDFLTEGLKRCRKSCRLRWLNYLKPNIKRGDFSEDEVDLIIRLHKLLGNRWSLIAGRLPGRTSNDVKNYWSTYTRRKLQSHNKDNNVKQHDTESTLKPHEVIKPLPQALSKTCPKLLQEKSINSFKDGVGEGATSSSGSGNWWETLLDEKEGNIAVNNKTCFFGGENGVFMLRDEELGSIASDFFTEGETWSTFFLT 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01361 374 ProSiteProfiles Myb-like domain profile. 13 70 IPR001005 -
Spst1g01361 374 Gene3D - 128 205 - -
Spst1g01361 374 Pfam Myb-like DNA-binding domain 206 250 IPR001005 -
Spst1g01361 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 74 IPR017930 -
Spst1g01361 374 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 39 107 - -
Spst1g01361 374 SUPERFAMILY Homeodomain-like 186 259 IPR009057 -
Spst1g01361 374 CDD SANT 209 250 IPR001005 -
Spst1g01361 374 ProSiteProfiles Myb-like domain profile. 201 251 IPR001005 -
Spst1g01361 374 CDD SANT 46 69 IPR001005 -
Spst1g01361 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 255 IPR017930 -
Spst1g01361 374 SUPERFAMILY Homeodomain-like 45 78 IPR009057 -
Spst1g01361 374 Gene3D - 25 99 - -
Spst1g01361 374 Gene3D - 207 280 - -
Spst1g01361 374 SMART sant 154 202 IPR001005 -
Spst1g01361 374 SMART sant 24 72 IPR001005 -
Spst1g01361 374 SMART sant 205 253 IPR001005 -
Spst1g01361 374 FunFam Transcription factor MYB113 208 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01361 Spst-Chr1 17075751 17083197 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01361 181 325 MYB Transcription Factor Family AT1G66370 47.126 6.59e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst1g01361 Myb_DNA-binding 3.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01361 - K16166 gmx:100780023 284.263